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NECEvent2014_8_5_scaffold_654

Alias: 178_005_scaffold_654

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_5_scaffold_654_trna_1
unknown

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106..177
DNA (72bp)
transferRNA
NECEvent2014_8_5_scaffold_654_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1204..1896
DNA (693bp) protein (231aa)
Sugar fermentation stimulation protein homolog n=4 Tax=Clostridium perfringens RepID=SFSA_CLOP1 rbh
sfsA; sugar fermentation stimulation protein A
Sugar fermentation stimulation protein homolog {ECO:0000255|HAMAP-Rule:MF_00095}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostrid
NECEvent2014_8_5_scaffold_654_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2310..2849
DNA (540bp) protein (180aa)
NUDIX family hydrolase n=5 Tax=Clostridium perfringens RepID=H7CT33_CLOPF rbh
NUDIX family hydrolase
Hydrolase, NUDIX family {ECO:0000313|EMBL:EDT14532.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1
NECEvent2014_8_5_scaffold_654_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3260..4555
DNA (1296bp) protein (432aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=5 Tax=Clostridium perfringens RepID=Q0TTL1_CLOP1 rbh
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120
NECEvent2014_8_5_scaffold_654_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5012..5230
DNA (219bp) protein (73aa)
Uncharacterized protein n=5 Tax=Clostridium perfringens RepID=Q8XMU2_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA17837.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_8_5_scaffold_654_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5233..5763
DNA (531bp) protein (177aa)
signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
Signal peptidase I n=9 Tax=Clostridium perfringens RepID=H7CT36_CLOPF rbh
NECEvent2014_8_5_scaffold_654_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5788..7941
DNA (2154bp) protein (718aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostr
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Clostridium perfringens RepID=H7CT37_CLOPF rbh
ftsH; ATP-dependent metalloprotease FtsH
NECEvent2014_8_5_scaffold_654_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8166..10286
DNA (2121bp) protein (707aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
Putative helicase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RST1_CLOPF rbh
helicase
NECEvent2014_8_5_scaffold_654_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10742..11578
DNA (837bp) protein (279aa)
Amino acid ABC transporter, amino acid-binding protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RST2_CLOPF rbh
amino acid ABC transporter
Probable amino acid ABC transporter {ECO:0000313|EMBL:BAB80306.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens
NECEvent2014_8_5_scaffold_654_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11609..12283
DNA (675bp) protein (225aa)
His/Glu/Gln/Arg/opine ABC transporter permease n=2 Tax=Clostridium perfringens RepID=H7CT40_CLOPF rbh
His/Glu/Gln/Arg/opine ABC transporter permease {ECO:0000313|EMBL:EIA17842.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium
His/Glu/Gln/Arg/opine ABC transporter permease
NECEvent2014_8_5_scaffold_654_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12277..12999
DNA (723bp) protein (241aa)
Amino acid ABC transporter, ATP-binding protein n=2 Tax=Clostridium perfringens RepID=Q0TTK4_CLOP1 rbh
amino acid ABC transporter ATP-binding protein
Probable amino acid ABC transporter {ECO:0000313|EMBL:BAB80308.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens
NECEvent2014_8_5_scaffold_654_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13217..15025
DNA (1809bp) protein (603aa)
Sulfatase family protein n=3 Tax=Clostridium perfringens RepID=Q0TTK3_CLOP1 rbh
sulfatase
Sulfatase family protein {ECO:0000313|EMBL:EDT22532.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATC
Displaying 12 items

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