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NECEvent2014_8_6_scaffold_114

Alias: 178_006_scaffold_114

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_6_scaffold_114_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53..334)
DNA (282bp) protein (94aa)
PRC-barrel domain protein n=3 Tax=Clostridium butyricum RepID=B1QUX3_CLOBU
YlmC/YmxH family sporulation protein {ECO:0000313|EMBL:ENZ36038.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum
sporulation protein, YlmC/YmxH family
NECEvent2014_8_6_scaffold_114_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(546..1853)
DNA (1308bp) protein (436aa)
Peptidase M16 domain protein n=3 Tax=Clostridium butyricum RepID=B1QUX4_CLOBU rbh
Processing proteinase {ECO:0000313|EMBL:EEP53701.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E
peptidase M16 domain-containing protein
NECEvent2014_8_6_scaffold_114_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1999..4104)
DNA (2106bp) protein (702aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=152315
pnp; polyribonucleotide nucleotidyltransferase Pnp (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z825_CLOBU rbh
NECEvent2014_8_6_scaffold_114_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4206..4469)
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=4 Tax=Clostridium butyricum RepID=B1QUX6_CLOBU
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rpsO; 30S ribosomal protein S15
NECEvent2014_8_6_scaffold_114_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4587..5522)
DNA (936bp) protein (312aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=997898 species="Bacteria; Firmicutes;
ribC: riboflavin biosynthesis protein RibC (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ATE6_CLOBU rbh
NECEvent2014_8_6_scaffold_114_6
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5538..6413)
DNA (876bp) protein (292aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
truB; tRNA pseudouridine synthase B (EC:5.4.99.25)
tRNA pseudouridine synthase B n=2 Tax=Clostridium butyricum RepID=M8JJ36_CLOBU rbh
NECEvent2014_8_6_scaffold_114_7
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6430..7407)
DNA (978bp) protein (326aa)
nrnA: bifunctional oligoribonuclease and PAP phosphatase NrnA (EC:3.1.-.- 3.1.3.7)
DHH subfamily 1 protein n=4 Tax=Clostridium butyricum RepID=B1QUX9_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ84576.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
NECEvent2014_8_6_scaffold_114_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7407..7760)
DNA (354bp) protein (118aa)
Ribosome-binding factor A n=3 Tax=Clostridium butyricum RepID=B1QUY0_CLOBU
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rbfA; ribosome-binding factor A
NECEvent2014_8_6_scaffold_114_9
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7774..9867)
DNA (2094bp) protein (698aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JHQ2_CLOBU rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBU
infB; translation initiation factor IF-2
NECEvent2014_8_6_scaffold_114_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9883..10203)
DNA (321bp) protein (107aa)
Ribosomal protein, L7Ae family n=4 Tax=Clostridium butyricum RepID=B1QUY2_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ36028.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ribosomal protein L7Ae/L30e/S12e/gadd45
NECEvent2014_8_6_scaffold_114_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10196..10462)
DNA (267bp) protein (89aa)
YlxR n=2 Tax=Clostridium butyricum RepID=M8J8Q6_CLOBU
Nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:KJZ83010.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
hypothetical protein
NECEvent2014_8_6_scaffold_114_12
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10478..11632)
DNA (1155bp) protein (385aa)
Transcription termination factor NusA n=2 Tax=Clostridium butyricum RepID=M8KCL3_CLOBU rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
nusA; transcription termination/antitermination protein NusA
NECEvent2014_8_6_scaffold_114_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11650..12111)
DNA (462bp) protein (154aa)
Ribosome maturation factor RimP n=4 Tax=Clostridium butyricum RepID=B1QUY5_CLOBU rbh
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
rimP; ribosome maturation factor RimP
NECEvent2014_8_6_scaffold_114_14
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12385..16716)
DNA (4332bp) protein (1444aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1523154 species="Bacteria; Firmicu
polC; DNA polymerase III PolC (EC:2.7.7.7)
DNA polymerase III polC-type n=2 Tax=Clostridium butyricum RepID=B1QUY6_CLOBU rbh
NECEvent2014_8_6_scaffold_114_15
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17004..18053)
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synt
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Clostridium butyricum RepID=M8JJ47_CLOBU rbh
NECEvent2014_8_6_scaffold_114_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18257..19270)
DNA (1014bp) protein (338aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
RIP metalloprotease RseP n=4 Tax=Clostridium butyricum RepID=B1QUY8_CLOBU rbh
putative membrane-associated zinc metalloprotease
NECEvent2014_8_6_scaffold_114_17
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19288..20448)
DNA (1161bp) protein (387aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase Dxr (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z812_CLOBU rbh
NECEvent2014_8_6_scaffold_114_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20461..21447)
DNA (987bp) protein (329aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1QUZ0_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:EEP55049.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT
permease
NECEvent2014_8_6_scaffold_114_19
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21574..22368)
DNA (795bp) protein (265aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae
cdsA; phosphatidate cytidylyltransferase CdsA (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=4 Tax=Clostridium butyricum RepID=B1QUZ1_CLOBU rbh
NECEvent2014_8_6_scaffold_114_20
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22382..23143)
DNA (762bp) protein (254aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostrid
Isoprenyl transferase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JJ52_CLOBU rbh
undecaprenyl diphosphate synthase
NECEvent2014_8_6_scaffold_114_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23239..23796)
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=2 Tax=Clostridium butyricum RepID=M8J8R8_CLOBU rbh
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=997898 species="Bacteria;
frr; ribosome-recycling factor Frr
NECEvent2014_8_6_scaffold_114_22
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23807..24520)
DNA (714bp) protein (238aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
pyrH; uridylate kinase PyrH (EC:2.7.4.22)
Uridylate kinase n=2 Tax=Clostridium butyricum RepID=M8KCM3_CLOBU rbh
NECEvent2014_8_6_scaffold_114_23
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24756..25673)
DNA (918bp) protein (306aa)
Elongation factor Ts n=2 Tax=Clostridium butyricum RepID=M8K4F2_CLOBU rbh
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostrid
tsf; elongation factor Ts
NECEvent2014_8_6_scaffold_114_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25774..26475)
DNA (702bp) protein (234aa)
30S ribosomal protein S2 n=2 Tax=Clostridium butyricum RepID=M8JHS1_CLOBU rbh
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rpsB; 30S ribosomal protein S2
NECEvent2014_8_6_scaffold_114_25
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26950..27726)
DNA (777bp) protein (259aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=3 Tax=Clostridium butyricum RepID=C4IJD5_CLOBU rbh
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621, ECO:0000256|SAAS:SAAS00044533}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostri
codY; GTP-sensing transcriptional pleiotropic repressor CodY
NECEvent2014_8_6_scaffold_114_26
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27928..30021)
DNA (2094bp) protein (698aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1523154 species="Bacteria; Firmicute
topA; DNA topoisomerase 1 (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J8S4_CLOBU rbh
NECEvent2014_8_6_scaffold_114_27
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30066..31127)
DNA (1062bp) protein (354aa)
DNA uptake protein n=4 Tax=Clostridium butyricum RepID=B1QSJ1_CLOBU rbh
Rossmann fold nucleotide-binding protein Smf {ECO:0000313|EMBL:KJZ83019.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium s
DNA protecting protein DprA
NECEvent2014_8_6_scaffold_114_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31140..32696)
DNA (1557bp) protein (519aa)
Mg chelatase-like protein n=4 Tax=Clostridium butyricum RepID=N9Z8D8_CLOBU rbh
Mg chelatase-like protein {ECO:0000313|EMBL:ENZ36010.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
comM; competence protein ComM
Displaying 28 items

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