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NECEvent2014_9_1_scaffold_171

Alias: 182_001_scaffold_171

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_9_1_scaffold_171_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(276..671)
DNA (396bp) protein (132aa)
Regulatory protein Spx n=83 Tax=Staphylococcus RepID=SPX_STAEQ
Regulatory protein spx
Regulatory protein Spx {ECO:0000256|HAMAP-Rule:MF_01132}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_9_1_scaffold_171_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

962..1951
DNA (990bp) protein (330aa)
Tryptophanyl-tRNA synthetase ## proteobacterial type (EC:6.1.1.2)
Tryptophan--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00140}; EC=6.1.1.2 {ECO:0000255|HAMAP-Rule:MF_00140};; Tryptophanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00140}; Short=TrpRS {ECO:0000255|HAMAP
Tryptophan--tRNA ligase n=41 Tax=Staphylococcus epidermidis RepID=SYW_STAES rbh
NECEvent2014_9_1_scaffold_171_3
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2009..3652)
DNA (1644bp) protein (548aa)
ABC transporter, substrate-binding protein, family 5 n=12 Tax=Staphylococcus epidermidis RepID=H3UE42_STAEP rbh
Uncharacterized protein {ECO:0000313|EMBL:ETJ13778.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA (TC 3.A.1.5.1)
NECEvent2014_9_1_scaffold_171_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3679..4617)
DNA (939bp) protein (313aa)
Oligopeptide ABC transporter, ATP-binding protein OppF n=46 Tax=Staphylococcus epidermidis RepID=Q5HQH6_STAEQ rbh
Oligopeptide transport ATP-binding protein oppF (TC 3.A.1.5.1)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE59218.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey
NECEvent2014_9_1_scaffold_171_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4610..5689)
DNA (1080bp) protein (360aa)
Oligopeptide ABC transporter, ATP-binding protein OppD n=39 Tax=Staphylococcus epidermidis RepID=Q5HQH7_STAEQ rbh
Oligopeptide transport ATP-binding protein oppD (TC 3.A.1.5.1)
Oligopeptide ABC transporter, ATP-binding protein OppD {ECO:0000313|EMBL:AAW53966.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermi
NECEvent2014_9_1_scaffold_171_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5704..6774)
DNA (1071bp) protein (357aa)
Oligopeptide transport system permease protein OppC n=14 Tax=Staphylococcus epidermidis RepID=Q8CPT1_STAES rbh
Oligopeptide transport system permease protein oppC (TC 3.A.1.5.1)
ABC transporter, permease protein {ECO:0000313|EMBL:EFE59220.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;
NECEvent2014_9_1_scaffold_171_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6774..7700)
DNA (927bp) protein (309aa)
Oligopeptide ABC transporter, permease protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HQH9_STAEQ rbh
Oligopeptide transport system permease protein oppB (TC 3.A.1.5.1)
Oligopeptide ABC transporter, permease protein {ECO:0000313|EMBL:AAW53964.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (str
NECEvent2014_9_1_scaffold_171_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7942..8313
DNA (372bp) protein (124aa)
Uncharacterized protein n=30 Tax=Staphylococcus epidermidis RepID=D4FK97_STAEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59222.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_9_1_scaffold_171_9
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8384..9628)
DNA (1245bp) protein (415aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphyloco
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=17 Tax=Staphylococcus epidermidis RepID=D4FK98_STAEP rbh
NECEvent2014_9_1_scaffold_171_10
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9640..10581)
DNA (942bp) protein (314aa)
3-oxoacyl-[acyl-carrier-protein] synthase,KASIII (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF
3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1 n=45 Tax=Staphylococcus epidermidis RepID=FABH1_STAES rbh
NECEvent2014_9_1_scaffold_171_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10863..11057
DNA (195bp) protein (65aa)
Uncharacterized protein n=48 Tax=Staphylococcus epidermidis RepID=Q5HQI3_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59225.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_9_1_scaffold_171_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11236..13830)
DNA (2595bp) protein (865aa)
ATP-dependent chaperone protein ClpB n=19 Tax=Staphylococcus epidermidis RepID=F3SV32_STAEP rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
clpB protein
NECEvent2014_9_1_scaffold_171_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14054..15877)
DNA (1824bp) protein (608aa)
Putative O-acetyltransferase SAS0844 (EC:2.3.1.-)
Membrane protein, putative n=31 Tax=Staphylococcus epidermidis RepID=Q5HQI6_STAEQ rbh
Membrane protein, putative {ECO:0000313|EMBL:AAW53950.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP6
NECEvent2014_9_1_scaffold_171_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16272..16580)
DNA (309bp) protein (103aa)
Uncharacterized protein n=80 Tax=Staphylococcus epidermidis RepID=Q5HQI7_STAEQ
PaaD-like protein involved in Fe-S cluster assembly
Uncharacterized protein {ECO:0000313|EMBL:EFE58015.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_9_1_scaffold_171_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16693..17514
DNA (822bp) protein (274aa)
Cof-like hydrolase n=13 Tax=Staphylococcus epidermidis RepID=D4FNX1_STAEP rbh
Cof-like hydrolase {ECO:0000313|EMBL:EFE58014.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
HAD hydrolase, IIB family protein
NECEvent2014_9_1_scaffold_171_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17594..18910
DNA (1317bp) protein (439aa)
Coenzyme A disulfide reductase {ECO:0000256|HAMAP-Rule:MF_01608}; Short=CoA-disulfide reductase {ECO:0000256|HAMAP-Rule:MF_01608};; Short=CoADR {ECO:0000256|HAMAP-Rule:MF_01608};; EC=1.8.1.14 {ECO:000
Coenzyme A disulfide reductase n=10 Tax=Staphylococcus epidermidis RepID=D4FNX0_STAEP rbh
coenzyme A disulfide reductase
NECEvent2014_9_1_scaffold_171_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19106..19507)
DNA (402bp) protein (134aa)
UPF0344 protein HMPREF0794_2257 n=13 Tax=Staphylococcus epidermidis RepID=D4FNW9_STAEP
UPF0344 protein HMPREF0794_2257 {ECO:0000256|HAMAP-Rule:MF_01536}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey)
Uncharacterized protein UPF0344
NECEvent2014_9_1_scaffold_171_18

Not on your lists

comp(19863..20768)
DNA (906bp) protein (302aa)
Uncharacterized protein SERP0556 n=50 Tax=Staphylococcus epidermidis RepID=Y556_STAEQ rbh
Fumarylacetoacetate hydrolase family protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ21256.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_9_1_scaffold_171_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20967..24641)
DNA (3675bp) protein (1225aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {E
ATP-dependent helicase/nuclease subunit A n=9 Tax=Staphylococcus epidermidis RepID=D4FNW7_STAEP rbh
ATP-dependent nuclease subunit A
NECEvent2014_9_1_scaffold_171_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24610..28089)
DNA (3480bp) protein (1160aa)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000255|HAMAP-Rule:MF_01452}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01452};; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01452};; ATP-dependent helic
ATP-dependent helicase/deoxyribonuclease subunit B n=3 Tax=Staphylococcus epidermidis RepID=J0ZCT8_STAEP rbh
rexB; exonuclease RexB
NECEvent2014_9_1_scaffold_171_21

Not on your lists

comp(28210..28785)
DNA (576bp) protein (192aa)
Signal peptidase I (EC:3.4.21.89)
Signal peptidase IB n=37 Tax=Staphylococcus epidermidis RepID=Q5HQJ6_STAEQ rbh
Signal peptidase I {ECO:0000313|EMBL:ETJ21253.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_9_1_scaffold_171_22

Not on your lists

comp(28804..29325)
DNA (522bp) protein (174aa)
Signal peptidase I (EC:3.4.21.89)
Signal peptidase IA, inactive n=27 Tax=Staphylococcus epidermidis RepID=Q5HQJ7_STAEQ rbh
Signal peptidase I {ECO:0000313|EMBL:ETJ21252.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_9_1_scaffold_171_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29329..29904)
DNA (576bp) protein (192aa)
Uncharacterized protein n=35 Tax=Staphylococcus epidermidis RepID=Q5HQJ8_STAEQ rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW53922.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Displaying 23 items

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