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Infant_2_SE_19

Alias: i2.NODE_96_length_109411_cov_62.479725

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Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Infant_2_SE_19_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1..441
DNA (441bp) protein (147aa)
Acetyl-coenzyme A carboxyl transferase beta chain (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltr
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=8 Tax=Staphylococcus aureus subsp. aureus RepID=C8ACS9_STAAU
Infant_2_SE_19_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

441..1385
DNA (945bp) protein (315aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=61 Tax=Staphylococcus RepID=ACCA_STAEQ
Infant_2_SE_19_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1563..2531
DNA (969bp) protein (323aa)
pfkA; 6-phosphofructokinase (EC:2.7.1.11)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:
6-phosphofructokinase n=67 Tax=Staphylococcus RepID=K6PF_STAES
Infant_2_SE_19_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2555..4312
DNA (1758bp) protein (586aa)
Pyruvate kinase; Short=PK;; EC=2.7.1.40;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=178 Tax=Staphylococcus RepID=KPYK_STAA3
Infant_2_SE_19_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4693..6051)
DNA (1359bp) protein (453aa)
D-serine/D-alanine/glycine transporter
Amino acid permease {ECO:0000313|EMBL:EFE59849.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
APC family amino acid-polyamine-organocation transporter n=63 Tax=Staphylococcus RepID=C5Q9U7_STAEP
Infant_2_SE_19_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6463..7584
DNA (1122bp) protein (374aa)
citZ; citrate synthase II
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Citrate synthase n=65 Tax=Staphylococcus RepID=D4FID1_STAEP
Infant_2_SE_19_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7627..8895
DNA (1269bp) protein (423aa)
Isocitrate dehydrogenase [NADP] (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP]; Short=IDH;; EC=1.1.1.42;; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;"
Isocitrate dehydrogenase [NADP] n=248 Tax=Staphylococcus RepID=IDH_STAEQ
Infant_2_SE_19_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9211..9921
DNA (711bp) protein (237aa)
Alkaline phosphatase synthesis transcriptional regulatory protein
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:AAW54628.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphyl
Response regulator n=76 Tax=Staphylococcus RepID=E6M6Q4_STALU
Infant_2_SE_19_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9921..11618
DNA (1698bp) protein (566aa)
alkaline phosphatase synthesis sensor protein
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcu
Possible histidine kinase n=61 Tax=Staphylococcus RepID=C5Q9U3_STAEP
Infant_2_SE_19_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11832..14543
DNA (2712bp) protein (904aa)
DNA polymerase I n=55 Tax=Staphylococcus RepID=Q8CNX7_STAES
DNA polymerase I
DNA polymerase I {ECO:0000313|EMBL:ESV20854.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Infant_2_SE_19_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14953..15474
DNA (522bp) protein (174aa)
Formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054
Possible DNA-(Apurinic or apyrimidinic site) lyase n=62 Tax=Staphylococcus RepID=C5Q9U1_STAEP
Infant_2_SE_19_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15490..16101
DNA (612bp) protein (204aa)
Dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=525375 species="Bacteria; Fi
Dephospho-CoA kinase n=60 Tax=Staphylococcus RepID=COAE_STAEQ
Infant_2_SE_19_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16456..16572
DNA (117bp) protein (39aa)
hypothetical protein
Conserved domain protein n=34 Tax=Staphylococcus RepID=D1WMU9_STAEP
IS1272, transposase {ECO:0000313|EMBL:EES35865.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
Infant_2_SE_19_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16945..17970
DNA (1026bp) protein (342aa)
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.13)
Glyceraldehyde-3-phosphate dehydrogenase 2; Short=GAPDH 2;; EC=1.2.1.12;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain
Glyceraldehyde-3-phosphate dehydrogenase 2 n=60 Tax=Staphylococcus RepID=G3P2_STAEQ
Infant_2_SE_19_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18490..18960
DNA (471bp) protein (157aa)
Ribonucleotide reductase transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococc
Transcriptional repressor NrdR n=2 Tax=Staphylococcus RepID=NRDR_STACT
Infant_2_SE_19_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18961..20331
DNA (1371bp) protein (457aa)
Helicase loader DnaB
Replication initiation and membrane attachment protein, DnaB/DnaD family {ECO:0000313|EMBL:EFE59859.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staph
Replication initiation and membrane attachment protein n=62 Tax=Staphylococcus RepID=D4FIE0_STAEP
Infant_2_SE_19_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20331..21251
DNA (921bp) protein (307aa)
Helicase loader DnaI
Primosomal protein DnaI {ECO:0000313|EMBL:AAW54612.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Primosomal protein DnaI n=60 Tax=Staphylococcus RepID=C5Q9T4_STAEP
Infant_2_SE_19_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21604..23541
DNA (1938bp) protein (646aa)
Threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
Threonine--tRNA ligase n=253 Tax=Staphylococcus RepID=SYT_STACT
Infant_2_SE_19_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23970..25472
DNA (1503bp) protein (501aa)
Lysine-specific permease
Amino acid permease family protein {ECO:0000313|EMBL:AAW54610.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 359
APC family amino acid-polyamine-organocation transporter n=67 Tax=Staphylococcus RepID=C5Q9T2_STAEP
Infant_2_SE_19_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25680..26207
DNA (528bp) protein (176aa)
Translation initiation factor 3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylo
Translation initiation factor IF-3 n=2 Tax=Staphylococcus RepID=Q4L721_STAHJ
Infant_2_SE_19_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


26235..26435
DNA (201bp) protein (67aa)
LSU ribosomal protein L35p
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus ep
50S ribosomal protein L35 n=253 Tax=Staphylococcus RepID=RL35_STAA1
Infant_2_SE_19_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


26487..26843
DNA (357bp) protein (119aa)
LSU ribosomal protein L20p
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus ep
50S ribosomal protein L20 n=192 Tax=Staphylococcus RepID=RL20_STAA1
Infant_2_SE_19_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27261..27872
DNA (612bp) protein (204aa)
NUDIX domain protein
Hydrolase, NUDIX family {ECO:0000313|EMBL:EFE59866.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
MutT/nudix family hydrolase n=61 Tax=Staphylococcus RepID=C5Q9S8_STAEP
Infant_2_SE_19_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27889..28812
DNA (924bp) protein (308aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59867.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Uncharacterized protein n=61 Tax=Staphylococcus RepID=I0TJJ5_STAAU
Infant_2_SE_19_25

Not on your lists

28973..30274
DNA (1302bp) protein (434aa)
Cell division trigger factor (EC:5.2.1.8)
Trigger factor {ECO:0000313|EMBL:ETJ18392.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Trigger factor n=63 Tax=Staphylococcus RepID=TIG_STAEQ
Infant_2_SE_19_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30561..31823
DNA (1263bp) protein (421aa)
clpX; ATP-dependent protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;"
ATP-dependent Clp protease ATP-binding subunit ClpX n=254 Tax=Staphylococcus RepID=CLPX_STAA1
Infant_2_SE_19_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32106..32561
DNA (456bp) protein (152aa)
engB; ribosome biogenesis GTP-binding protein YsxC
Probable GTP-binding protein EngB {ECO:0000255|HAMAP-Rule:MF_00321}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC
Probable GTP-binding protein EngB n=61 Tax=Staphylococcus RepID=ENGB_STAEQ
Infant_2_SE_19_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32731..34077
DNA (1347bp) protein (449aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|Rule
hemA; glutamyl-tRNA reductase
Glutamyl-tRNA reductase n=64 Tax=Staphylococcus RepID=HEM1_STAEQ
Infant_2_SE_19_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34099..34911
DNA (813bp) protein (271aa)
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase
Cytochrome c assembly protein {ECO:0000313|EMBL:EFE59872.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Cytochrome c assembly protein n=59 Tax=Staphylococcus RepID=C5Q9S3_STAEP
Infant_2_SE_19_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34965..35891
DNA (927bp) protein (309aa)
Porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAM
Porphobilinogen deaminase n=62 Tax=Staphylococcus RepID=HEM3_STAEQ
Displaying items 1-30 of 96 in total

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