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Infant_2_SE_60

Alias: i2.NODE_472_length_66360_cov_66.232986

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Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Infant_2_SE_60_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3..110)
DNA (108bp) protein (36aa)
Transcription accessory protein (S1 RNA-binding domain)
Uncharacterized protein {ECO:0000313|EMBL:ESV20190.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Tex-like protein N-terminal domain protein n=1 Tax=Staphylococcus aureus subsp. aureus IS-250 RepID=I0TNU0_STAAU
Infant_2_SE_60_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(398..1168)
DNA (771bp) protein (257aa)
RNA polymerase sigma factor SigB
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 /
RNA polymerase sigma factor n=268 Tax=Staphylococcus RepID=C5QD20_STAEP
Infant_2_SE_60_3
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1143..1250)
DNA (108bp) protein (36aa)
Serine-protein kinase rsbW (EC:2.7.11.1)
Serine-protein kinase RsbW {ECO:0000256|HAMAP-Rule:MF_00638}; EC=2.7.11.1 {ECO:0000256|HAMAP-Rule:MF_00638};; Anti-sigma-B factor {ECO:0000256|HAMAP-Rule:MF_00638}; Sigma-B negative effector RsbW {ECO
Serine-protein kinase RsbW n=64 Tax=Staphylococcus RepID=RSBW_STAEP
Infant_2_SE_60_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1667..1993)
DNA (327bp) protein (109aa)
anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Anti-sigma-B factor antagonist n=79 Tax=Staphylococcus RepID=RSBV_STAEP
Infant_2_SE_60_5
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2093..3094)
DNA (1002bp) protein (334aa)
Possible phosphoserine phosphatase n=66 Tax=Staphylococcus RepID=C5QD17_STAEP
rsbU; sigma factor B regulator protein
Putative phosphoserine phosphatase {ECO:0000313|EMBL:ETJ12719.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Infant_2_SE_60_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3484..3846)
DNA (363bp) protein (121aa)
Programmed cell death toxin YdcE
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcu
mRNA interferase MazF n=62 Tax=Staphylococcus RepID=MAZF_STAEP
Infant_2_SE_60_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3843..4013)
DNA (171bp) protein (57aa)
Programmed cell death antitoxin YdcD
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein {ECO:0000313|EMBL:EFE60121.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source=
Antitoxin MazE n=65 Tax=Staphylococcus RepID=MAZE_STAEQ
Infant_2_SE_60_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4100..5248)
DNA (1149bp) protein (383aa)
Alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=525375 species="Bacteria; Firmicu
Alanine racemase n=61 Tax=Staphylococcus RepID=ALR_STAEQ
Infant_2_SE_60_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5315..5668)
DNA (354bp) protein (118aa)
Holo-[acyl-carrier-protein] synthase n=61 Tax=Staphylococcus RepID=ACPS_STAEQ
Holo-[acyl-carrier protein] synthase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF
Infant_2_SE_60_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5716..6225)
DNA (510bp) protein (170aa)
Hypothetical protein, ydbS homolog
Uncharacterized protein {ECO:0000313|EMBL:EFE60124.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Uncharacterized protein n=59 Tax=Staphylococcus RepID=J0GSV5_STAEP
Infant_2_SE_60_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6212..6559)
DNA (348bp) protein (116aa)
Hypothetical protein, ydbT homolog
Membrane protein, putative {ECO:0000313|EMBL:AAW55049.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP6
Conserved domain protein n=61 Tax=Staphylococcus RepID=F3U0V1_STAEP
Infant_2_SE_60_12
unknown

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7026..7238
DNA (213bp) protein (71aa)
0
Infant_2_SE_60_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10364..11719)
DNA (1356bp) protein (452aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=57 Tax=Staphylococcus RepID=D4FHH9_STAEP
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopim elate--D-alanyl-D-alanyl ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillale
Infant_2_SE_60_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11731..12804)
DNA (1074bp) protein (358aa)
ddl; D-alanyl-alanine synthetase A (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000255|HAMAP-Rule:MF_00047}; EC=6.3.2.4 {ECO:0000255|HAMAP-Rule:MF_00047};; D-Ala-D-Ala ligase {ECO:0000255|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000
D-alanine--D-alanine ligase n=66 Tax=Staphylococcus RepID=DDL_STAEQ
Infant_2_SE_60_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13195..14406
DNA (1212bp) protein (404aa)
Cell division protein FtsW
Cell division protein, FtsW/RodA/SpoVE family {ECO:0000313|EMBL:AAW55061.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (stra
FtsW/RodA/SpoVE family cell division protein n=58 Tax=Staphylococcus RepID=C5QD07_STAEP
Infant_2_SE_60_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14505..14642)
DNA (138bp) protein (46aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESV20206.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Uncharacterized protein n=61 Tax=Staphylococcus RepID=I0TNR1_STAAU
Infant_2_SE_60_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14785..14994)
DNA (210bp) protein (70aa)
Hypothetical protein SAV2086
Uncharacterized protein {ECO:0000313|EMBL:AAW55063.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Heavy metal-associated domain protein n=61 Tax=Staphylococcus RepID=H0DT93_STAEP
Infant_2_SE_60_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15001..15294)
DNA (294bp) protein (98aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW55064.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Copper-sensing transcriptional repressor CsoR n=61 Tax=Staphylococcus RepID=F3TRL1_STAEP
Infant_2_SE_60_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15468..16952
DNA (1485bp) protein (495aa)
Cardiolipin synthetase (EC:2.7.8.-)
Cardiolipin synthase {ECO:0000256|HAMAP-Rule:MF_01916}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01916};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01916};; TaxID=525375 species="Bacteria; Firmicutes;
Cardiolipin synthase 2 n=57 Tax=Staphylococcus RepID=CLS2_STAEQ
Infant_2_SE_60_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17134..17787
DNA (654bp) protein (218aa)
metal-dependent phosphohydrolase
HD domain protein {ECO:0000313|EMBL:AAW55066.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Hydrolase n=61 Tax=Staphylococcus RepID=C5QD02_STAEP
Infant_2_SE_60_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17893..18810)
DNA (918bp) protein (306aa)
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane protein YidC {ECO
lipoprotein
Membrane protein insertase YidC 2 n=64 Tax=Staphylococcus RepID=YIDC2_STAEQ
Infant_2_SE_60_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18854..19381)
DNA (528bp) protein (176aa)
Thiamin-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00097}; Short=TP synthase {ECO:0000255|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000255|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000255|HAMAP-Rule:MF
Thiamine-phosphate synthase n=59 Tax=Staphylococcus RepID=THIE_STAEQ
Infant_2_SE_60_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19396..19626)
DNA (231bp) protein (77aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=5253
Hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=60 Tax=Staphylococcus RepID=THIM_STAEQ
Infant_2_SE_60_24
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19640..19876)
DNA (237bp) protein (79aa)
Thiamin-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5
Thiamine-phosphate synthase n=59 Tax=Staphylococcus RepID=THIE_STAEQ
Infant_2_SE_60_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19873..20664)
DNA (792bp) protein (264aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethy
hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=60 Tax=Staphylococcus RepID=THIM_STAEQ
Infant_2_SE_60_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20654..21505)
DNA (852bp) protein (284aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EFE60139.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EFE60139.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Stap
Phosphomethylpyrimidine kinase n=49 Tax=Staphylococcus RepID=C5QCZ8_STAEP
Phosphomethylpyrimidine kinase (EC:2.7.4.7)
Infant_2_SE_60_27
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21468..22157)
DNA (690bp) protein (230aa)
TenA family transcription regulator
Uncharacterized protein {ECO:0000313|EMBL:ETJ12884.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Putative thiaminase-2 n=61 Tax=Staphylococcus RepID=TENA_STAEQ
Infant_2_SE_60_28
Staphylococcus simiae, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22441..23271)
DNA (831bp) protein (277aa)
SceD protein, putative {ECO:0000313|EMBL:EHJ07176.1}; TaxID=911238 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus simiae CCM 7213.;"
SceD protein, putative n=1 Tax=Staphylococcus simiae CCM 7213 RepID=G5JKX1_9STAP
SceD-like transglycosylase, biomarker for vancomycin-intermediate strains
Infant_2_SE_60_29
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23286..23516)
DNA (231bp) protein (77aa)
SceD-like transglycosylase, biomarker for vancomycin-intermediate strains
Putative transglycosylase sceD {ECO:0000313|EMBL:ETJ12883.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Probable transglycosylase SceD n=61 Tax=Staphylococcus RepID=SCED_STAEQ
Infant_2_SE_60_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23904..24299)
DNA (396bp) protein (132aa)
single strand DNA binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli;
Single-stranded DNA-binding protein n=61 Tax=Staphylococcus RepID=SSB_STAES
Displaying items 1-30 of 69 in total

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