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OR_05152018_10m_0_1um_scaffold_10

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Displaying items 1-30 of 104 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_05152018_10m_0_1um_scaffold_10_1
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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261..1874
DNA (1614bp) protein (538aa)
FAD dependent oxidoreductase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21S83_RHOFD
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABD71370.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
OR_05152018_10m_0_1um_scaffold_10_2
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1983..2675
DNA (693bp) protein (231aa)
Nucleic acid binding, OB-fold, tRNA/helicase-type n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21S84_RHOFD
nucleic acid-binding, OB-fold, tRNA/helicase-type
Nucleic acid binding, OB-fold, tRNA/helicase-type {ECO:0000313|EMBL:ABD71369.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
OR_05152018_10m_0_1um_scaffold_10_3
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2724..2939
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21S85_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_4
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2936..3163
DNA (228bp) protein (76aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS58590.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein id=5082839 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
conserved hypothetical protein
OR_05152018_10m_0_1um_scaffold_10_5
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3340..4209
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222F6_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_6
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4237..5436
DNA (1200bp) protein (400aa)
threonine dehydratase (EC:4.3.1.19)
L-threonine ammonia-lyase {ECO:0000313|EMBL:ABD68098.1}; EC=4.3.1.19 {ECO:0000313|EMBL:ABD68098.1};; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
L-threonine ammonia-lyase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222F5_RHOFD
OR_05152018_10m_0_1um_scaffold_10_7
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5527..5667
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222F4_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_8
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6047..7951
DNA (1905bp) protein (635aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YC18_9BURK
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
OR_05152018_10m_0_1um_scaffold_10_9
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8226..9593
DNA (1368bp) protein (456aa)
glutamate--ammonia ligase (EC:6.3.1.2)
L-glutamine synthetase {ECO:0000313|EMBL:ABD68104.1}; EC=6.3.1.2 {ECO:0000313|EMBL:ABD68104.1};; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
L-glutamine synthetase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222E9_RHOFD
OR_05152018_10m_0_1um_scaffold_10_10
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9635..11044
DNA (1410bp) protein (470aa)
Putative aminotransferase id=1279012 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
putative aminotransferase
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
OR_05152018_10m_0_1um_scaffold_10_11
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11129..12289
DNA (1161bp) protein (387aa)
Putrescine-binding periplasmic protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VR84_POLNA
extracellular solute-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
OR_05152018_10m_0_1um_scaffold_10_12
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12329..13429
DNA (1101bp) protein (367aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
Putrescine transport ATP-binding protein potG n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6F9_9BURK
spermidine/putrescine ABC transporter ATPase
OR_05152018_10m_0_1um_scaffold_10_13
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13441..14358
DNA (918bp) protein (306aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VR82_POLNA
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABM38160.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
OR_05152018_10m_0_1um_scaffold_10_14
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14369..15226
DNA (858bp) protein (286aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VR81_POLNA
binding-protein-dependent transport system inner membrane protein
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) {ECO:0000313|EMBL:CDS49913.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
OR_05152018_10m_0_1um_scaffold_10_15
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15277..16746
DNA (1470bp) protein (490aa)
aldehyde dehydrogenase (EC:1.2.1.3)
Aldehyde dehydrogenase (Acceptor) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222E3_RHOFD
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_16
unknown

Not on your lists

17058..17243
DNA (186bp) protein (62aa)

This feature has no annotations

OR_05152018_10m_0_1um_scaffold_10_17
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17276..18268)
DNA (993bp) protein (331aa)
Patatin n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222D8_RHOFD
patatin
Patatin {ECO:0000313|EMBL:ABD68115.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
OR_05152018_10m_0_1um_scaffold_10_18
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18265..19479)
DNA (1215bp) protein (405aa)
6-phosphofructokinase (EC:2.7.1.11)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
6-phosphofructokinase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222D7_RHOFD
OR_05152018_10m_0_1um_scaffold_10_19
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19720..20211
DNA (492bp) protein (164aa)
Hemerythrin HHE cation binding protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222D6_RHOFD
hemerythrin HHE cation-binding protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_20
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20394..21305
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5B0_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG91420.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
OR_05152018_10m_0_1um_scaffold_10_21
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21331..22545
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5A9_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG91419.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
OR_05152018_10m_0_1um_scaffold_10_22
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22591..23697)
DNA (1107bp) protein (369aa)
MltA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222D4_RHOFD
MltA
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_23
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23741..23902
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MHA6_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_24
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23942..28066)
DNA (4125bp) protein (1375aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222D3_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD68120.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
OR_05152018_10m_0_1um_scaffold_10_25
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28082..30817
DNA (2736bp) protein (912aa)
glutamate-ammonia-ligase adenylyltransferase (EC:2.7.7.42)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222D2_RHOFD
OR_05152018_10m_0_1um_scaffold_10_26
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30965..32980
DNA (2016bp) protein (672aa)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
Ribonucleoside-triphosphate reductase, anaerobic n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222D1_RHOFD
Ribonucleoside-triphosphate reductase, anaerobic {ECO:0000313|EMBL:ABD68122.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
OR_05152018_10m_0_1um_scaffold_10_27
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33012..33215
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222D0_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_28
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33160..33945
DNA (786bp) protein (262aa)
Ribonucleoside-triphosphate reductase, anaerobic-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222C9_RHOFD
ribonucleoside-triphosphate reductase, anaerobic-like protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_29
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34109..35260
DNA (1152bp) protein (384aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222C8_RHOFD
extracellular ligand-binding receptor
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
OR_05152018_10m_0_1um_scaffold_10_30
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35651..36265
DNA (615bp) protein (205aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0E1_LEPCP
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying items 1-30 of 104 in total

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