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OR_07112018_10m_0_1um_scaffold_558

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07112018_10m_0_1um_scaffold_558_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..674)
DNA (672bp) protein (224aa)
putative cell cycle control ATPase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA id=12498661 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cell cycle control ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(688..2430)
DNA (1743bp) protein (581aa)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000255|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000255|HAMAP-Rule:MF_01703};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00038012FC
lipid A export ATP-binding/permease MsbA
OR_07112018_10m_0_1um_scaffold_558_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2427..3869)
DNA (1443bp) protein (481aa)
Divalent cation transporter id=1319873 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
divalent cation transporter
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_4
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4405..5142
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B657C5
multi-sensor signal transduction histidine kinase
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
OR_07112018_10m_0_1um_scaffold_558_5
unknown

Not on your lists

5142..5312
DNA (171bp) protein (57aa)

This feature has no annotations

OR_07112018_10m_0_1um_scaffold_558_6
CG_Proteo_01, Proteobacteria, Bacteria

Not on your lists

5450..6061
DNA (612bp) protein (204aa)
LuxR family transcriptional regulator n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B73920
LuxR family transcriptional regulator
Tax=CG_Proteo_01
OR_07112018_10m_0_1um_scaffold_558_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6089..6787)
DNA (699bp) protein (233aa)
peptidoglycan transglycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F4369
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6784..7581)
DNA (798bp) protein (266aa)
shikimate dehydrogenase (EC:1.1.1.25)
shikimate 5-dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI0003661DB0
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7619..8074)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036017A7
rhodanese-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8331..9740
DNA (1410bp) protein (470aa)
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase id=1319869 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9873..10346
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C1243
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10522..11514
DNA (993bp) protein (331aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-)
PAS/PAC Sensor Signal Transduction Histidine Kinase id=1319867 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11520..12929
DNA (1410bp) protein (470aa)
two component Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG id=12496389 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Fis family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13009..13329)
DNA (321bp) protein (107aa)
glutaredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI0003791E5F
glutaredoxin-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13409..14533)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036630B7
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14520..15443)
DNA (924bp) protein (308aa)
Hpr(Ser) kinase/phosphatase (EC:2.7.1.-)
aldolase n=1 Tax=Thiobacillus thioparus RepID=UPI00036B6D47
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15743..16396)
DNA (654bp) protein (218aa)
hypothetical protein id=12494762 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_558_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16535..16972)
DNA (438bp) protein (146aa)
Release factor glutamine methyltransferase id=1319860 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
modification methylase HemK
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 18 items

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