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OR_07182017_23_Bacteroidetes_38_5

In projects: OR_07182017_23  |  mine_tailing_impoundment_time_series  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Taxonomy override: Bacteroidetes

Description

Coverage profile OK.

Displaying items 101-150 of 843 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
OR_07182017_23_scaffold_353
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (54.55%)
11 11653 bp 38.21 6.02 91.93
OR_07182017_23_scaffold_869
Phylum: Bacteroidetes (100%)
5 6304 bp 35.63 6.02 91.47
OR_07182017_23_scaffold_404
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (85.71%)
7 10309 bp 40.99 6.02 96.93
OR_07182017_23_scaffold_314
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (85.71%)
7 9802 bp 37.54 6.01 93.87
OR_07182017_23_scaffold_1475
Phylum: Bacteroidetes (75%)
4 2993 bp 35.35 6.01 92.52
OR_07182017_23_scaffold_2212
Species: Runella slithyformis (50%)
2 2047 bp 38.54 6.01 98.49
OR_07182017_23_scaffold_222
Phylum: Bacteroidetes (90%)
10 12582 bp 38.21 6.01 88.08
OR_07182017_23_scaffold_1410
Species: Pseudopedobacter saltans (50%)
4 3100 bp 38.42 6.00 99.10
OR_07182017_23_scaffold_391
Order: Sphingobacteriales (85.71%)
7 8503 bp 37.09 6.00 97.48
OR_07182017_23_scaffold_2087
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2178 bp 35.31 5.99 97.93
OR_07182017_23_scaffold_389
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (63.64%)
11 8514 bp 37.83 5.99 87.07
OR_07182017_23_scaffold_1613
Species: Niastella koreensis (50%)
2 2783 bp 36.26 5.98 99.28
OR_07182017_23_scaffold_2420
Phylum: Bacteroidetes (100%)
3 1855 bp 35.90 5.98 94.77
OR_07182017_23_scaffold_1988
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 2282 bp 39.92 5.98 88.87
OR_07182017_23_scaffold_439
Phylum: Bacteroidetes (76.92%)
13 7771 bp 34.15 5.98 78.37
OR_07182017_23_scaffold_838
Phylum: Bacteroidetes (66.67%)
3 4747 bp 36.76 5.97 89.80
OR_07182017_23_scaffold_2011
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2260 bp 40.97 5.97 91.73
OR_07182017_23_scaffold_3047
Species: Sphingobacterium spiritivorum (50%)
2 1458 bp 39.99 5.97 99.38
OR_07182017_23_scaffold_1416
Phylum: Bacteroidetes (60%)
5 3095 bp 37.45 5.96 94.60
OR_07182017_23_scaffold_481
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (62.5%)
8 7124 bp 40.22 5.96 89.91
OR_07182017_23_scaffold_1017
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 4150 bp 40.94 5.96 92.53
OR_07182017_23_scaffold_881
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 6682 bp 41.47 5.95 95.50
OR_07182017_23_scaffold_1486
Phylum: Bacteroidetes (66.67%)
3 2976 bp 34.61 5.95 99.90
OR_07182017_23_scaffold_994
Phylum: Bacteroidetes (80%)
10 6711 bp 37.16 5.95 83.10
OR_07182017_23_scaffold_2266
Phylum: Bacteroidetes (66.67%)
3 1993 bp 39.44 5.95 93.93
OR_07182017_23_scaffold_400
Order: Sphingobacteriales (80%)
5 8353 bp 37.15 5.94 98.77
OR_07182017_23_scaffold_527
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (71.43%)
7 6639 bp 38.11 5.94 92.54
OR_07182017_23_scaffold_337
Phylum: Bacteroidetes (60%)
10 9454 bp 35.21 5.93 92.47
OR_07182017_23_scaffold_619
Species: Arcticibacter svalbardensis (50%)
6 5873 bp 36.45 5.93 92.15
OR_07182017_23_scaffold_665
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 5614 bp 39.01 5.93 90.15
OR_07182017_23_scaffold_449
Order: Sphingobacteriales (60%)
5 7594 bp 39.24 5.93 95.06
OR_07182017_23_scaffold_772
Phylum: Bacteroidetes (83.33%)
6 6908 bp 38.01 5.93 97.06
OR_07182017_23_scaffold_2337
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1927 bp 38.61 5.92 88.74
OR_07182017_23_scaffold_1227
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 3497 bp 38.32 5.92 83.21
OR_07182017_23_scaffold_2852
Species: Pedobacter sp. V48 (100%)
1 1573 bp 33.06 5.91 89.64
OR_07182017_23_scaffold_429
Phylum: Bacteroidetes (60%)
5 7947 bp 35.59 5.91 93.96
OR_07182017_23_scaffold_688
Species: Pedobacter heparinus (50%)
4 5484 bp 37.45 5.91 90.43
OR_07182017_23_scaffold_2232
Phylum: Bacteroidetes (66.67%)
3 2029 bp 37.46 5.91 92.56
OR_07182017_23_scaffold_738
Species: Arcticibacter svalbardensis (50%)
4 5178 bp 38.53 5.91 98.73
OR_07182017_23_scaffold_1127
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 3764 bp 34.91 5.90 92.69
OR_07182017_23_scaffold_1138
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 3735 bp 41.82 5.90 93.09
OR_07182017_23_scaffold_1585
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 2822 bp 38.77 5.90 86.22
OR_07182017_23_scaffold_1718
Genus: Flavihumibacter (50%)
4 2599 bp 40.94 5.89 86.11
OR_07182017_23_scaffold_1483
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2981 bp 40.52 5.89 99.73
OR_07182017_23_scaffold_620
Species: Niastella koreensis (83.33%)
6 5871 bp 38.51 5.88 97.50
OR_07182017_23_scaffold_886
Order: Sphingobacteriales (64.29%)
14 12266 bp 35.21 5.88 93.48
OR_07182017_23_scaffold_2167
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 2091 bp 35.25 5.88 99.86
OR_07182017_23_scaffold_1470
Phylum: Bacteroidetes (75%)
4 3008 bp 33.54 5.88 81.38
OR_07182017_23_scaffold_770
Genus: Flavihumibacter (60%)
5 5028 bp 38.88 5.88 91.47
OR_07182017_23_scaffold_808
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 4871 bp 34.18 5.88 99.71
Displaying items 101-150 of 843 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.