ggKbase home page

OR_07232018_dam_0_1um_scaffold_286

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_286_1
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67..1326
DNA (1260bp) protein (420aa)
Transposase, IS4 family n=4 Tax=Burkholderiaceae RepID=A4JGL4_BURVG
transposase DDE domain protein
Transposase ISRme8 {ECO:0000313|EMBL:ABF11021.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
OR_07232018_dam_0_1um_scaffold_286_2

Not on your lists

comp(1418..2419)
DNA (1002bp) protein (334aa)
Putative Bacterial regulatory protein, LysR n=1 Tax=mine drainage metagenome RepID=E6PMU6_9ZZZZ
Putative Bacterial regulatory protein, LysR {ECO:0000313|EMBL:CBH96248.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative Bacterial regulatory protein, LysR
OR_07232018_dam_0_1um_scaffold_286_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2542..4062
DNA (1521bp) protein (507aa)
Methylmalonate-semialdehyde dehydrogenase (Acylating), mitochondrial {ECO:0000313|EMBL:CDW94530.1}; EC=1.2.1.27 {ECO:0000313|EMBL:CDW94530.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH) (EC:1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSD9_THIA3
OR_07232018_dam_0_1um_scaffold_286_4
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4117..5802
DNA (1686bp) protein (562aa)
choline dehydrogenase (EC:1.1.99.1)
Choline dehydrogenase {ECO:0000313|EMBL:ADG30127.1}; EC=1.1.99.1 {ECO:0000313|EMBL:ADG30127.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Choline dehydrogenase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6K0_THIK1
OR_07232018_dam_0_1um_scaffold_286_5
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5803..6705)
DNA (903bp) protein (301aa)
Putative Aldose 1-epimerase (EC:5.1.3.3)
Putative Aldose 1-epimerase {ECO:0000313|EMBL:CAZ87665.1}; EC=5.1.3.3 {ECO:0000313|EMBL:CAZ87665.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative Aldose 1-epimerase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSD7_THIA3
OR_07232018_dam_0_1um_scaffold_286_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6768..8228)
DNA (1461bp) protein (487aa)
Major facilitator superfamily MFS_1 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6J8_THIK1
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG30125.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_286_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8240..8722)
DNA (483bp) protein (161aa)
bacterioferritin n=1 Tax=Thiobacillus thioparus RepID=UPI000382CFA9
bacterioferritin
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_07232018_dam_0_1um_scaffold_286_trna_1
unknown

Not on your lists

9299..9372
DNA (74bp)
transferRNA Met
OR_07232018_dam_0_1um_scaffold_286_8
Serratia multitudinisentens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9680..10714
DNA (1035bp) protein (345aa)
Probable family 20 transposase n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFD4_9BURK
transposase IS110
Transposase {ECO:0000313|EMBL:AHG20713.1}; TaxID=1441930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia multitudinisentens RB-25.;"
OR_07232018_dam_0_1um_scaffold_286_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10993..11856
DNA (864bp) protein (288aa)
GCN5-related N-acetyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6J3_THIK1
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADG30120.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_286_10
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11844..13091)
DNA (1248bp) protein (416aa)
glyA; Serine hydroxymethyltransferase (Serine methylase) (SHMT) (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:CAZ87614.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Serine hydroxymethyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CS86_THIA3
OR_07232018_dam_0_1um_scaffold_286_11
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13309..14178)
DNA (870bp) protein (290aa)
Lytic transglycosylase catalytic n=2 Tax=Thiomonas RepID=D5X6J1_THIK1
Putative Lytic transglycosylase, catalytic
Putative Lytic transglycosylase, catalytic {ECO:0000313|EMBL:CAZ87612.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_286_12
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14485..16038
DNA (1554bp) protein (518aa)
3-octaprenyl-4-hydroxybenzoate decarboxylase {ECO:0000313|EMBL:CDW94325.1}; EC=4.1.1.- {ECO:0000313|EMBL:CDW94325.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
UbiD family decarboxylase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6J0_THIK1
UbiD family decarboxylase
OR_07232018_dam_0_1um_scaffold_286_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16322..16843)
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6I9_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG30116.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_286_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16981..17544
DNA (564bp) protein (188aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6I8_THIK1
OR_07232018_dam_0_1um_scaffold_286_15
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17541..18611
DNA (1071bp) protein (357aa)
Putative HPP family protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CS80_THIA3
Putative HPP family protein
Putative HPP family protein {ECO:0000313|EMBL:CAZ87608.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_286_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18953..19360)
DNA (408bp) protein (136aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5X6_THIK1
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADG30029.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_286_17
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19386..20792)
DNA (1407bp) protein (469aa)
FAD linked oxidase domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5X3_THIK1
FAD linked oxidase domain-containing protein
FAD linked oxidase domain protein {ECO:0000313|EMBL:ADG30026.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_286_18
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20868..21464
DNA (597bp) protein (199aa)
putative Cob(I)yrinic acid a,c-diamide adenosyltransferase, meaD (EC:2.5.1.17)
Putative Cob(I)yrinic acid a,c-diamide adenosyltransferase, meaD {ECO:0000313|EMBL:CAZ87512.1}; EC=2.5.1.17 {ECO:0000313|EMBL:CAZ87512.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative Cob(I)yrinic acid a,c-diamide adenosyltransferase, meaD n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CKP4_THIA3
OR_07232018_dam_0_1um_scaffold_286_19
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21539..22876
DNA (1338bp) protein (446aa)
Multidrug resistance protein mdtA (Multidrug transporter mdtA) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CKP3_THIA3
Multidrug efflux system, subunit A {ECO:0000313|EMBL:CDW94441.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
mdtA; Multidrug resistance protein mdtA precursor (Multidrug transporter mdtA)
OR_07232018_dam_0_1um_scaffold_286_20
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22873..23187
DNA (315bp) protein (105aa)
Acriflavin resistance protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5W9_THIK1
acriflavin resistance protein
Multidrug efflux system, subunit B {ECO:0000313|EMBL:CDW94442.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Displaying 21 items

View Taxonomy