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OR_07232018_dam_0_1um_scaffold_307

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_307_1
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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225..809
DNA (585bp) protein (195aa)
Putative transcriptional regulator n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVK3_THIA3
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:CAZ89322.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_307_2
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(784..2097)
DNA (1314bp) protein (438aa)
gltA; citrate synthase (EC:2.3.3.1)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Citrate synthase n=2 Tax=Thiomonas RepID=D5X4M0_THIK1
OR_07232018_dam_0_1um_scaffold_307_3
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2183..2455)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVK5_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ89324.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_307_4
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2463..3179)
DNA (717bp) protein (239aa)
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=2 Tax=Thiomonas RepID=D5X4M2_THIK1
OR_07232018_dam_0_1um_scaffold_307_5
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3219..4982)
DNA (1764bp) protein (588aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
sdhA; Succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase flavoprotein subunit n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CL98_THIA3
OR_07232018_dam_0_1um_scaffold_307_6
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4983..5348)
DNA (366bp) protein (122aa)
Putative Succinate dehydrogenase hydrophobic membrane anchor protein (SdhD) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CL99_THIA3
putative Succinate dehydrogenase hydrophobic membrane anchor protein (sdhD)
Putative Succinate dehydrogenase hydrophobic membrane anchor protein (SdhD) {ECO:0000313|EMBL:CDW93151.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_307_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5350..5763)
DNA (414bp) protein (138aa)
Putative Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556) (SdhC) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLA0_THIA3
putative Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556) (sdhC)
Putative Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556) (SdhC) {ECO:0000313|EMBL:CAZ89328.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_307_8
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5942..6655)
DNA (714bp) protein (238aa)
Transcriptional regulator, GntR family n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4M6_THIK1
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDW93153.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
GntR family transcriptional regulator
OR_07232018_dam_0_1um_scaffold_307_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6922..7908
DNA (987bp) protein (329aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Malate dehydrogenase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4M7_THIK1
malate dehydrogenase
OR_07232018_dam_0_1um_scaffold_307_10
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7922..8812
DNA (891bp) protein (297aa)
prpB; Methylisocitrate lyase (2-methylisocitrate lyase) (EC:4.1.3.30)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121, ECO:0000313|EMBL:CAZ89331.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Methylisocitrate lyase (2-methylisocitrate lyase) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLA3_THIA3
OR_07232018_dam_0_1um_scaffold_307_11
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8833..9996
DNA (1164bp) protein (388aa)
prpC; 2-methylcitrate synthase (Methylcitrate synthase) (Citrate synthase 2) (EC:2.3.3.5)
Citrate synthase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLA4_THIA3
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_307_12
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10100..10609
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLA5_THIA3
conserved hypothetical protein; putative exported protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ89333.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_307_13
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10621..12072
DNA (1452bp) protein (484aa)
prpD; 2-methylcitrate dehydratase (EC:4.2.1.79)
2-methylcitrate dehydratase {ECO:0000313|EMBL:CAZ89334.1}; EC=4.2.1.79 {ECO:0000313|EMBL:CAZ89334.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
2-methylcitrate dehydratase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLA6_THIA3
OR_07232018_dam_0_1um_scaffold_307_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12087..14822
DNA (2736bp) protein (912aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Aconitate hydratase 1 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4N2_THIK1
aconitate hydratase 1
OR_07232018_dam_0_1um_scaffold_307_15
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14844..16166
DNA (1323bp) protein (441aa)
Putative FAD dependent oxidoreductase / dehydrogenase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLA8_THIA3
Putative FAD dependent oxidoreductase / dehydrogenase {ECO:0000313|EMBL:CDW93160.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative FAD dependent oxidoreductase / dehydrogenase
OR_07232018_dam_0_1um_scaffold_307_16
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16048..16449)
DNA (402bp) protein (134aa)
Arsenate reductase-like protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4N4_THIK1
Protein YffB {ECO:0000313|EMBL:CDW93161.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
arsenate reductase-like protein
OR_07232018_dam_0_1um_scaffold_307_17
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16446..17234)
DNA (789bp) protein (263aa)
UPF0246 protein Tint_2350 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4N5_THIK1
hypothetical protein
UPF0246 protein Tint_2350 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_307_18
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17303..18892)
DNA (1590bp) protein (530aa)
Alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding {ECO:0000313|EMBL:CDW93163.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CDW93163.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
ahpF; Alkyl hydroperoxide reductase subunit F (Alkyl hydroperoxide reductase F52A protein) (EC:1.8.1.-)
Alkyl hydroperoxide reductase subunit F (Alkyl hydroperoxide reductase F52A protein) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLB1_THIA3
OR_07232018_dam_0_1um_scaffold_307_19

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comp(19008..19571)
DNA (564bp) protein (188aa)
Alkyl hydroperoxide reductase subunit C (Peroxiredoxin) (Thioredoxin peroxidase) (Alkyl hydroperoxide reductase protein C22) (SCRP-23) (Sulfate starvation-induced protein 8) (SSI8) {ECO:0000313|EMBL:CBH96225.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CBH96225.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peroxiredoxin (EC:1.11.1.15)
Alkyl hydroperoxide reductase subunit C (Peroxiredoxin) (Thioredoxin peroxidase) (Alkyl hydroperoxide reductase protein C22) (SCRP-23) (Sulfate starvation-induced protein 8) (SSI8) n=1 Tax=mine drainage metagenome RepID=E6PMS3_9ZZZZ
OR_07232018_dam_0_1um_scaffold_307_20
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19785..20678
DNA (894bp) protein (298aa)
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:CDW93166.1}; EC=1.1.1.60 {ECO:0000313|EMBL:CDW93166.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative 2-hydroxy-3-oxopropionate reductase (Tartronate semialdehyde reductase) (TSAR), garR (EC:1.1.1.60)
Putative 2-hydroxy-3-oxopropionate reductase (Tartronate semialdehyde reductase) (TSAR), garR n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLB4_THIA3
OR_07232018_dam_0_1um_scaffold_307_21
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20662..21561)
DNA (900bp) protein (300aa)
arylformamidase (EC:3.5.1.9)
Arylformamidase {ECO:0000313|EMBL:ADG31703.1}; EC=3.5.1.9 {ECO:0000313|EMBL:ADG31703.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Arylformamidase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4N9_THIK1
OR_07232018_dam_0_1um_scaffold_307_trna_1
unknown

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21713..21785
DNA (73bp)
transferRNA Ala
Displaying 22 items

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