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OR_07242016_12_scaffold_141

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07242016_12_scaffold_141_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(43..348)
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EAM5_RUNSL
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(432..1427)
DNA (996bp) protein (332aa)
chorismate synthase Tax=Segetibacter koreensis RepID=UPI000374B539
chorismate synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1439..2716)
DNA (1278bp) protein (426aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL5_NIAKG
3-phosphoshikimate 1-carboxyvinyltransferase
OR_07242016_12_scaffold_141_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(2769..3788)
DNA (1020bp) protein (340aa)
3-dehydroquinate synthase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL6_NIAKG
3-dehydroquinate synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(3888..4973)
DNA (1086bp) protein (362aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL8_NIAKG
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(5007..6725)
DNA (1719bp) protein (573aa)
DEAD/DEAH box helicase Tax=Segetibacter koreensis RepID=UPI0003829B4E
DEAD/DEAH box helicase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(6902..7741)
DNA (840bp) protein (280aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000362F6A3
prephenate dehydrogenase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_8
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7738..8910)
DNA (1173bp) protein (391aa)
LL-diaminopimelate aminotransferase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJM1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91395.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
LL-diaminopimelate aminotransferase
OR_07242016_12_scaffold_141_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(8914..9594)
DNA (681bp) protein (227aa)
Prephenate dehydratase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJM2_NIAKG
Prephenate dehydratase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_10
unknown

Not on your lists

comp(10342..10746)
DNA (405bp) protein (135aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000378A70D
OR_07242016_12_scaffold_141_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

10766..11239
DNA (474bp) protein (158aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036D8A3A
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

11244..12353
DNA (1110bp) protein (370aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000382647B
peptidase S1 and S6 chymotrypsin/Hap
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12400..13065)
DNA (666bp) protein (222aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF68_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02688.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
OR_07242016_12_scaffold_141_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(13124..14032)
DNA (909bp) protein (303aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003774591
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14087..15010
DNA (924bp) protein (308aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000371E361
putative D-cysteine desulfhydrase (DcyD)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_16

Not on your lists

15010..16179
DNA (1170bp) protein (390aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036F58A1
Marine sediment metagenome DNA, contig: S01H4_S14016 {ECO:0000313|EMBL:GAG97691.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
OR_07242016_12_scaffold_141_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(16165..16905)
DNA (741bp) protein (247aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000374145B
octanoyltransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16979..18025
DNA (1047bp) protein (349aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000366D734
ribosomal large subunit pseudouridine synthase D
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18107..19126
DNA (1020bp) protein (340aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Biotin synthase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPY7_NIAKG
biotin synthase
OR_07242016_12_scaffold_141_20
unknown

Not on your lists

19138..19266
DNA (129bp) protein (43aa)

This feature has no annotations

OR_07242016_12_scaffold_141_21
Enterobacter sp. 35730, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19370..19702
DNA (333bp) protein (111aa)
Uncharacterized protein {ECO:0000313|EMBL:KJM96457.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35730.;"
OR_07242016_12_scaffold_141_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(19647..21599)
DNA (1953bp) protein (651aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCZ6_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_141_23
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21722..23632)
DNA (1911bp) protein (637aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000380832B
Beta-N-acetylhexosaminidase {ECO:0000313|EMBL:ETZ24214.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
beta-N-acetylhexosaminidase
OR_07242016_12_scaffold_141_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23703..27290)
DNA (3588bp) protein (1196aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000380F9D2
ASPIC/UnbV domain protein {ECO:0000313|EMBL:AEW01735.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
ASPIC/UnbV domain-containing protein
OR_07242016_12_scaffold_141_25
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27407..29146)
DNA (1740bp) protein (580aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003775221
carbohydrate-binding protein SusD
Carbohydrate-binding protein SusD {ECO:0000313|EMBL:AKD55464.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
OR_07242016_12_scaffold_141_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29173..32352)
DNA (3180bp) protein (1060aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI000370783D
TonB-dependent receptor plug {ECO:0000313|EMBL:AEW01737.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
TonB-dependent receptor plug
OR_07242016_12_scaffold_141_27
Robiginitalea biformata, Robiginitalea, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

32556..33053
DNA (498bp) protein (166aa)
Putative uncharacterized protein Tax=Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) RepID=A4CPB4_ROBBH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAR14235.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Robiginitalea.;" source="Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146).;"
OR_07242016_12_scaffold_141_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33268..34143
DNA (876bp) protein (292aa)
Transcriptional regulator, AraC family Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH47_NIAKG
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEW00658.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
OR_07242016_12_scaffold_141_29
unknown

Not on your lists

comp(34158..34454)
DNA (297bp) protein (99aa)

This feature has no annotations

OR_07242016_12_scaffold_141_30
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

34603..39426
DNA (4824bp) protein (1608aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003684E05
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying items 1-30 of 104 in total

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