ggKbase home page

OR_07242016_12_scaffold_786

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07242016_12_scaffold_786_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(1..645)
DNA (645bp) protein (215aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003633F7C
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_786_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

773..1453
DNA (681bp) protein (227aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00035DADD5
two component transcriptional regulator, winged helix family
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_786_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

1631..2677
DNA (1047bp) protein (349aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00036B95F9
integral membrane sensor signal transduction histidine kinase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_786_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

2965..3612
DNA (648bp) protein (216aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003692396
putative phosphate transport regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_786_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3672..4712
DNA (1041bp) protein (347aa)
inorganic phosphate transporter Tax=Flavobacterium antarcticum RepID=UPI0003B59A0B
inorganic phosphate transporter, PiT family
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_786_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4770..5825
DNA (1056bp) protein (352aa)
UDP-galactose-4-epimerase Tax=Segetibacter koreensis RepID=UPI00037B7469
UDP-galactose 4-epimerase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_786_7
unknown

Not on your lists

comp(5748..5969)
DNA (222bp) protein (74aa)

This feature has no annotations

OR_07242016_12_scaffold_786_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(6200..7261)
DNA (1062bp) protein (354aa)
peptide chain release factor 1 Tax=Segetibacter koreensis RepID=UPI00037EFEAF
peptide chain release factor 1 (bRF-1)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_786_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7358..7627
DNA (270bp) protein (90aa)
N-acyl-D-glutamate deacylase {ECO:0000313|EMBL:AEW02681.1}; EC=3.5.1.82 {ECO:0000313|EMBL:AEW02681.1};; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
N-acyl-D-glutamate deacylase Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF61_NIAKG
N-acyl-D-glutamate deacylase
OR_07242016_12_scaffold_786_10
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7678..8886
DNA (1209bp) protein (403aa)
N-acyl-D-amino-acid deacylase {ECO:0000313|EMBL:AEI49515.1}; EC=3.5.1.81 {ECO:0000313|EMBL:AEI49515.1};; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
hypothetical protein Tax=Niabella aurantiaca RepID=UPI00036EE0B8
N-acyl-D-amino-acid deacylase
OR_07242016_12_scaffold_786_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

8936..10093
DNA (1158bp) protein (386aa)
Zn-dependent dipeptidase, microsomal dipeptidase Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YT13_AEQSU
Zn-dependent dipeptidase, microsomal dipeptidase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_07242016_12_scaffold_786_12
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10160..12340
DNA (2181bp) protein (727aa)
Glutaryl-7-aminocephalosporanic-acid acylase {ECO:0000313|EMBL:AEI49894.1}; EC=3.5.1.93 {ECO:0000313|EMBL:AEI49894.1};; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
hypothetical protein Tax=Segetibacter koreensis RepID=UPI00037698BC
glutaryl-7-aminocephalosporanic-acid acylase
OR_07242016_12_scaffold_786_13
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12532..13488
DNA (957bp) protein (319aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (T(6)A) formation in tRNA Tax=Flavobacterium frigoris PS1 RepID=H7FUJ1_9FLAO
translation factor (SUA5)
OR_07242016_12_scaffold_786_14
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13596..14165
DNA (570bp) protein (190aa)
cAMP-binding protein Tax=Mariniradius saccharolyticus AK6 RepID=M7XFV8_9BACT
cAMP-binding protein {ECO:0000313|EMBL:EMS33744.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
cyclic nucleotide-binding protein
OR_07242016_12_scaffold_786_15
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14243..15055
DNA (813bp) protein (271aa)
Short-chain dehydrogenase/reductase SDR Tax=Fibrisoma limi BUZ 3 RepID=I2GGB7_9BACT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CCH52942.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
short-chain dehydrogenase/reductase SDR
OR_07242016_12_scaffold_786_16
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15234..15815
DNA (582bp) protein (194aa)
dihydrofolate reductase Tax=Segetibacter koreensis RepID=UPI0003736604
bifunctional deaminase-reductase domain-containing protein
Tax=GWE2_Bacteroidetes_42_39_curated
OR_07242016_12_scaffold_786_17
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15866..16285
DNA (420bp) protein (140aa)
Uncharacterized protein bin=GWF2_Bacteroidetes_49_14 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
Tax=GWF2_Bacteroidetes_49_14_curated
OR_07242016_12_scaffold_786_18
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16373..16813
DNA (441bp) protein (147aa)
Uncharacterized protein Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z7Q1_BELBD
Uncharacterized protein {ECO:0000313|EMBL:KIA86977.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
OR_07242016_12_scaffold_786_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17001..17390
DNA (390bp) protein (130aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Niabella soli DSM 19437 RepID=H1NPU0_9SPHI
glyoxalase
Glyoxalase {ECO:0000313|EMBL:AHF14924.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
OR_07242016_12_scaffold_786_20
unknown

Not on your lists

comp(17344..17520)
DNA (177bp) protein (59aa)

This feature has no annotations

OR_07242016_12_scaffold_786_21
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17684..18004
DNA (321bp) protein (107aa)
ArsR family transcriptional regulator Tax=Spirosoma luteum RepID=UPI00036EE20E
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:AEI49121.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
OR_07242016_12_scaffold_786_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18001..18135
DNA (135bp) protein (45aa)
Activator of Hsp90 ATPase 1 family protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNA2_NIAKG
Activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:AEV98804.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying 22 items

View Taxonomy