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OR_07242016_13_scaffold_6

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Displaying items 1-30 of 376 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07242016_13_scaffold_6_1
unknown

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124..708
DNA (585bp) protein (195aa)

This feature has no annotations

OR_07242016_13_scaffold_6_2
Pseudomonas chloritidismutans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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705..1823
DNA (1119bp) protein (373aa)
Uncharacterized protein Tax=Pseudomonas chloritidismutans AW-1 RepID=V4Q2Z5_PSECO
Uncharacterized protein {ECO:0000313|EMBL:ESQ97114.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chloritidismutans AW-1.;"
phage integrase family protein
OR_07242016_13_scaffold_6_3
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2299..4887
DNA (2589bp) protein (863aa)
Type I restriction-modification system methyltransferase subunit (EC:2.1.1.72)
Type I restriction-modification system methyltransferase subunit protein {ECO:0000313|EMBL:ADJ66027.1}; EC=2.1.1.72 {ECO:0000313|EMBL:ADJ66027.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
Type I restriction-modification system methyltransferase subunit protein Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IWZ0_HERSS
OR_07242016_13_scaffold_6_4
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

4884..6119
DNA (1236bp) protein (412aa)
Type-1 restriction enzyme EcoDI specificity protein Tax=Enterococcus faecium E4453 RepID=G9SUJ3_ENTFC
Type I restriction-modification system specificity subunit {ECO:0000313|EMBL:EDM28290.1}; species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
hsdS; type I restriction-modification system specificity subunit
OR_07242016_13_scaffold_6_5
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6176..9319
DNA (3144bp) protein (1048aa)
HsdR-like type I restriction modification system protein Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IWY8_HERSS
HsdR-like type I restriction modification system protein
HsdR-like type I restriction modification system protein {ECO:0000313|EMBL:ADJ66025.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
OR_07242016_13_scaffold_6_trna_2
unknown

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comp(9869..9956)
DNA (88bp)
transferRNA Ser
OR_07242016_13_scaffold_6_6
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10064..11386)
DNA (1323bp) protein (441aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0T9_HALNC
TrmA family RNA methyltransferase
OR_07242016_13_scaffold_6_7
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11468..12028)
DNA (561bp) protein (187aa)
Alkylated DNA repair protein Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3RCV4_CUPTR
alkB; alkylated DNA repair protein
Alkylated DNA repair protein {ECO:0000313|EMBL:CAQ72729.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
OR_07242016_13_scaffold_6_8
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(12153..15254)
DNA (3102bp) protein (1034aa)
hypothetical protein Tax=Bordetella sp. FB-8 RepID=UPI000376EAB4
AcrB/AcrD/AcrF family protein {ECO:0000313|EMBL:ACO33943.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
AcrB/AcrD/AcrF family protein
OR_07242016_13_scaffold_6_9
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15257..16414)
DNA (1158bp) protein (386aa)
hypothetical protein Tax=Bordetella sp. FB-8 RepID=UPI00035F309E
efflux transporter, RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:BAP88147.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
OR_07242016_13_scaffold_6_10
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16577..16933
DNA (357bp) protein (119aa)
High-potential iron-sulfur protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KWQ7_HALNC
high potential iron-sulfur protein
High-potential iron-sulfur protein {ECO:0000256|RuleBase:RU000620}; Short=HiPIP {ECO:0000256|RuleBase:RU000620};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_6_11
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17060..20224)
DNA (3165bp) protein (1055aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) Tax=Methylobacter tundripaludum SV96 RepID=G3IXF6_9GAMM
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) {ECO:0000313|EMBL:EGW23213.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
hypothetical protein
OR_07242016_13_scaffold_6_12
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20345..21211)
DNA (867bp) protein (289aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Shikimate dehydrogenase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYM2_HALNC
shikimate 5-dehydrogenase
OR_07242016_13_scaffold_6_13
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21211..21873)
DNA (663bp) protein (221aa)
ribose 5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Ribose-5-phosphate isomerase A Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYM3_HALNC
OR_07242016_13_scaffold_6_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22025..23548
DNA (1524bp) protein (508aa)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Threonine dehydratase, biosynthetic Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYM4_HALNC
threonine dehydratase, biosynthetic
OR_07242016_13_scaffold_6_15
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24161..24625)
DNA (465bp) protein (155aa)
Putative uncharacterized protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYM5_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX95548.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_6_16
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24655..25392)
DNA (738bp) protein (246aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
5-formyltetrahydrofolate cyclo-ligase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYM6_HALNC
5-formyltetrahydrofolate cyclo-ligase
OR_07242016_13_scaffold_6_17
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25533..26972)
DNA (1440bp) protein (480aa)
putative Cytochrome-c peroxidase (EC:1.11.1.5)
Putative Cytochrome-c peroxidase Tax=mine drainage metagenome RepID=E6PV15_9ZZZZ
MauG, Cytochrome c peroxidase {ECO:0000313|EMBL:KFZ89858.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
OR_07242016_13_scaffold_6_18

Not on your lists

comp(27050..28804)
DNA (1755bp) protein (585aa)
Putative Phospholipase C {ECO:0000313|EMBL:CBH98773.1}; EC=3.1.4.3 {ECO:0000313|EMBL:CBH98773.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative Phospholipase C Tax=mine drainage metagenome RepID=E6PV16_9ZZZZ
phosphoesterase
OR_07242016_13_scaffold_6_19
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28907..30613)
DNA (1707bp) protein (569aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
L-aspartate oxidase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYM8_HALNC
L-aspartate oxidase
OR_07242016_13_scaffold_6_20
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30957..31592
DNA (636bp) protein (212aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYM9_HALNC
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACX95552.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_6_21
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31636..32319
DNA (684bp) protein (228aa)
Putative uncharacterized protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYN0_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX95553.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_6_22
gamma proteobacterium HTCC5015, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32322..33500
DNA (1179bp) protein (393aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI00036BD07F
MucB/RseB {ECO:0000313|EMBL:EDY85809.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HTCC5015.;"
rseB; sigma-E factor negative regulatory protein RseB
OR_07242016_13_scaffold_6_23
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33501..34073
DNA (573bp) protein (191aa)
Positive regulator of sigma E, RseC/MucC Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYN1_HALNC
sigma E positive regulator RseC/MucC
Positive regulator of sigma E, RseC/MucC {ECO:0000313|EMBL:ACX95554.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_6_24
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34181..35695
DNA (1515bp) protein (505aa)
protease Do (EC:3.4.21.108)
Protease Do {ECO:0000313|EMBL:ACX96226.1}; EC=3.4.21.108 {ECO:0000313|EMBL:ACX96226.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Protease Do Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0K3_HALNC
OR_07242016_13_scaffold_6_25
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35840..37648
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Elongation factor 4 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0K2_HALNC
GTP-binding protein LepA
OR_07242016_13_scaffold_6_26
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37690..38487
DNA (798bp) protein (266aa)
signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Signal peptidase I Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0K1_HALNC
OR_07242016_13_scaffold_6_27
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38523..38915
DNA (393bp) protein (131aa)
Putative uncharacterized protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0K0_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96223.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_6_28
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38902..39615
DNA (714bp) protein (238aa)
ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Ribonuclease 3 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0J9_HALNC
OR_07242016_13_scaffold_6_29
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39671..40624
DNA (954bp) protein (318aa)
GTPase Era Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0J8_HALNC
GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Displaying items 1-30 of 376 in total

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