ggKbase home page

OR_08082017_0_5m_0_2um_scaffold_135

Search features with annotation key words

Displaying items 1-30 of 152 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08082017_0_5m_0_2um_scaffold_135_1
unknown

Not on your lists

3..488
DNA (486bp) protein (162aa)

This feature has no annotations

OR_08082017_0_5m_0_2um_scaffold_135_2
BJP_08E140C01_10KDA_Methylophilales_47_88, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

507..1289
DNA (783bp) protein (261aa)
Tax=BJP_08E140C01_10KDA_Methylophilales_47_88
OR_08082017_0_5m_0_2um_scaffold_135_3
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1308..2138
DNA (831bp) protein (277aa)
NAD-dependent protein deacetylase {ECO:0000313|EMBL:EXI65225.1}; EC=3.5.1.- {ECO:0000313|EMBL:EXI65225.1};; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
Sir2 family transcriptional regulator n=1 Tax=Thauera sp. 28 RepID=N6YKI5_9RHOO
Silent information regulator protein Sir2
OR_08082017_0_5m_0_2um_scaffold_135_trna_6
unknown

Not on your lists

comp(2271..2344)
DNA (74bp)
transferRNA Arg
OR_08082017_0_5m_0_2um_scaffold_135_trna_5
unknown

Not on your lists

comp(2753..2836)
DNA (84bp)
transferRNA Leu
OR_08082017_0_5m_0_2um_scaffold_135_4
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3073..3864
DNA (792bp) protein (264aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QLN6_METS6
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OR_08082017_0_5m_0_2um_scaffold_135_5
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3950..4852
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI00037384DE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI30657.1}; Flags: Precursor;; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
OR_08082017_0_5m_0_2um_scaffold_135_6
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4942..5445)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DLW4_METS0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI30658.1}; Flags: Precursor;; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
OR_08082017_0_5m_0_2um_scaffold_135_7
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5619..6218)
DNA (600bp) protein (200aa)
Lytic transglycosylase catalytic n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QLN8_METS6
lytic transglycosylase catalytic subunit
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ACT51520.1}; Flags: Precursor;; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
OR_08082017_0_5m_0_2um_scaffold_135_8
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6215..7921)
DNA (1707bp) protein (569aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00173448};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Proline--tRNA ligase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QLN9_METS6
proS; prolyl-tRNA synthetase
OR_08082017_0_5m_0_2um_scaffold_135_9
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8281..10455
DNA (2175bp) protein (725aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
Catalase-peroxidase n=1 Tax=Thauera sp. 63 RepID=N6Y2T9_9RHOO
catalase/peroxidase HPI
OR_08082017_0_5m_0_2um_scaffold_135_10
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10587..10916)
DNA (330bp) protein (110aa)
Transcriptional regulator, ArsR family n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DNN9_METS0
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ADI29056.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
OR_08082017_0_5m_0_2um_scaffold_135_11
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11005..11757
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DNN8_METS0
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADI29055.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
OR_08082017_0_5m_0_2um_scaffold_135_12
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11876..12385)
DNA (510bp) protein (170aa)
membrane protein n=1 Tax=Methylotenera RepID=UPI0003735DCD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT51523.1}; Flags: Precursor;; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
OR_08082017_0_5m_0_2um_scaffold_135_13
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12396..13235)
DNA (840bp) protein (280aa)
membrane protein n=1 Tax=Methylotenera RepID=UPI00036677DC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT51524.1}; Flags: Precursor;; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
OR_08082017_0_5m_0_2um_scaffold_135_14
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13245..13844)
DNA (600bp) protein (200aa)
LemA family protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI0003810855
LemA family protein
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
OR_08082017_0_5m_0_2um_scaffold_135_15
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13924..14634)
DNA (711bp) protein (237aa)
Putative DNA polymerase-related protein,bacteriophage-type (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QHE4_9ZZZZ
putative Phage SPO1 DNA polymerase-related protein
Putative Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:CEN55378.1}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
OR_08082017_0_5m_0_2um_scaffold_135_16
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14663..15124)
DNA (462bp) protein (154aa)
SSU ribosomal protein S18P alanine acetyltransferase (EC:2.3.1.-)
[SSU ribosomal protein S18P]-alanine acetyltransferase {ECO:0000313|EMBL:ABE48683.1}; EC=2.3.1.128 {ECO:0000313|EMBL:ABE48683.1};; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
[SSU ribosomal protein S18P]-alanine acetyltransferase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H4A4_METFK
OR_08082017_0_5m_0_2um_scaffold_135_17
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15135..15818)
DNA (684bp) protein (228aa)
Peptidase M22 glycoprotease n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QLP6_METS6
peptidase m22 glycoprotease
Putative peptidase {ECO:0000313|EMBL:CEN55376.1}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
OR_08082017_0_5m_0_2um_scaffold_135_18
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15904..16308)
DNA (405bp) protein (135aa)
Class I peptide chain release factor n=2 Tax=Methylovorus RepID=E4QLP7_METS6
yaeJ; conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEN55375.1}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
OR_08082017_0_5m_0_2um_scaffold_135_19
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16386..16640
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI000374D71B
Uncharacterized protein {ECO:0000313|EMBL:EUJ11763.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
hypothetical protein
OR_08082017_0_5m_0_2um_scaffold_135_20
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16727..17392
DNA (666bp) protein (222aa)
HAD-superfamily subfamily IB hydrolase, TIGR01490 n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X7K4_METSD
conserved protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CEN56498.1}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
OR_08082017_0_5m_0_2um_scaffold_135_trna_4
unknown

Not on your lists

comp(17417..17487)
DNA (71bp)
transferRNA Undet
OR_08082017_0_5m_0_2um_scaffold_135_21
Brachybacterium muris, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17645..18661)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Brachybacterium muris RepID=UPI00034D9006
Uncharacterized protein {ECO:0000313|EMBL:EYT49192.1}; TaxID=1249481 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium muris UCD-AY4.;"
hypothetical protein
OR_08082017_0_5m_0_2um_scaffold_135_22
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18781..19602)
DNA (822bp) protein (274aa)
Cytochrome c assembly protein n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H3Z6_METFK
cytochrome c assembly protein
Cytochrome c assembly protein {ECO:0000313|EMBL:ABE48791.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
OR_08082017_0_5m_0_2um_scaffold_135_23
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19783..21135
DNA (1353bp) protein (451aa)
Signal recognition particle protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DM14_METS0
ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
OR_08082017_0_5m_0_2um_scaffold_135_trna_1
unknown

Not on your lists

21275..21347
DNA (73bp)
transferRNA Lys
OR_08082017_0_5m_0_2um_scaffold_135_24
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21766..25497
DNA (3732bp) protein (1244aa)
histidine kinase n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI000360B14A
PAS domain S-box {ECO:0000313|EMBL:EUJ11019.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
multi-sensor hybrid histidine kinase
OR_08082017_0_5m_0_2um_scaffold_135_25
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25490..26470
DNA (981bp) protein (327aa)
chemotaxis protein CheY n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI00037A3698
Response regulator containing a CheY-like receiver domain and an HD-GYP domain {ECO:0000313|EMBL:EUJ11020.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
response regulator receiver modulated metal dependent phosphohydrolase
OR_08082017_0_5m_0_2um_scaffold_135_26
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26759..27568
DNA (810bp) protein (270aa)
TPR repeat-containing protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DK24_METS0
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ADI30385.1}; Flags: Precursor;; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
Displaying items 1-30 of 152 in total

View Taxonomy