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OR_08142018_10m_0_1um_scaffold_113

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_113_trna_6
unknown

Not on your lists

comp(39..111)
DNA (73bp)
transferRNA Trp
OR_08142018_10m_0_1um_scaffold_113_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(182..1372)
DNA (1191bp) protein (397aa)
tuf; elongation factor Tu (EC:3.6.5.3)
elongation factor Tu, partial n=2 Tax=Thiobacillus denitrificans RepID=UPI000376B2A7
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1419..3488)
DNA (2070bp) protein (690aa)
translation elongation factor 2 (EF-2/EF-G); K02355 elongation factor G id=12495326 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
elongation factor G
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_113_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3520..3990)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Thiobacillus thioparus RepID=UPI0003610F4E
30S ribosomal protein S7
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4009..4386)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RS12_THIDA
rpsL; 30S ribosomal protein S12
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_113_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4554..8753)
DNA (4200bp) protein (1400aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F6840
OR_08142018_10m_0_1um_scaffold_113_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8775..11981)
DNA (3207bp) protein (1069aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E57C9
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12064..12618)
DNA (555bp) protein (185aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RPOB_THIDA
OR_08142018_10m_0_1um_scaffold_113_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12847..13224)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E9230
rplL; 50S ribosomal protein L7/L12
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13293..13703)
DNA (411bp) protein (137aa)
50S ribosomal protein L10 n=1 Tax=Thiobacillus thioparus RepID=UPI00037236CC
rplJ; 50S ribosomal protein L10
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_113_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13833..14528)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Thiobacillus thioparus RepID=UPI00037B74CA
50S ribosomal protein L1
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_113_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14530..14961)
DNA (432bp) protein (144aa)
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=12498637 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rplK; 50S ribosomal protein L11
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_113_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15063..15590)
DNA (528bp) protein (176aa)
transcription antitermination protein NusG n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D6399
transcription antitermination protein nusG
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_113_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15593..15940)
DNA (348bp) protein (116aa)
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=12495336 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
secE; preprotein translocase subunit SecE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_113_trna_5
unknown

Not on your lists

comp(15973..16045)
DNA (73bp)
transferRNA Trp
OR_08142018_10m_0_1um_scaffold_113_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16036..17214)
DNA (1179bp) protein (393aa)
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu id=12495325 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
tuf; elongation factor Tu (EC:3.6.5.3)
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_trna_4
unknown

Not on your lists

comp(17380..17451)
DNA (72bp)
transferRNA Thr
OR_08142018_10m_0_1um_scaffold_113_trna_3
unknown

Not on your lists

comp(17509..17579)
DNA (71bp)
transferRNA Gly
OR_08142018_10m_0_1um_scaffold_113_trna_2
unknown

Not on your lists

comp(17611..17692)
DNA (82bp)
transferRNA Tyr
OR_08142018_10m_0_1um_scaffold_113_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17763..18854)
DNA (1092bp) protein (364aa)
Putative uncharacterized protein id=1308457 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ychF; GTP-dependent nucleic acid-binding protein EngD
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18851..19453)
DNA (603bp) protein (201aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Peptidyl-tRNA hydrolase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=PTH_THIDA
OR_08142018_10m_0_1um_scaffold_113_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19493..20095)
DNA (603bp) protein (201aa)
50S ribosomal protein L25 id=1308455 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
50S ribosomal protein L25
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20182..21132)
DNA (951bp) protein (317aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=1308454 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_trna_1
unknown

Not on your lists

comp(21208..21279)
DNA (72bp)
transferRNA Gln
OR_08142018_10m_0_1um_scaffold_113_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21287..22177)
DNA (891bp) protein (297aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003788A70
OR_08142018_10m_0_1um_scaffold_113_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22174..22728)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360F0F9
outer membrane lipoprotein LolB
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22728..24509)
DNA (1782bp) protein (594aa)
Putative uncharacterized protein id=1308451 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
TPR repeat-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_113_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24592..25746)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D750D
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_113_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25743..26456)
DNA (714bp) protein (238aa)
ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00036DFF89
ABC transporter
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_113_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26456..27583)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000371F6CC
RND family efflux transporter MFP subunit
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 93 in total

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