ggKbase home page

OR_08142018_2_5m_0_2um_scaffold_460

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_2_5m_0_2um_scaffold_460_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1135
DNA (1134bp) protein (378aa)
multidrug transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036161D3
hydrophobe/amphiphile efflux-1 HAE1
Hydrophobe/amphiphile efflux-1 HAE1 {ECO:0000313|EMBL:AAZ97370.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_2_5m_0_2um_scaffold_460_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1135..2535
DNA (1401bp) protein (467aa)
multidrug transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F19BA
RND efflux system outer membrane lipoprotein NodT
RND efflux system outer membrane lipoprotein NodT {ECO:0000313|EMBL:AAZ97369.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_2_5m_0_2um_scaffold_460_3
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2627..3331)
DNA (705bp) protein (235aa)
Major facilitator superfamily permease n=1 Tax=Pseudomonas stutzeri CCUG 29243 RepID=I4CPU8_PSEST
major facilitator superfamily permease
Major facilitator superfamily permease {ECO:0000313|EMBL:AFM32105.1}; TaxID=1196835 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri CCUG 29243.;"
OR_08142018_2_5m_0_2um_scaffold_460_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3488..5377
DNA (1890bp) protein (630aa)
prohead protease n=1 Tax=Thiobacillus denitrificans RepID=UPI000360935E
CBS signal-transduction protein
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_2um_scaffold_460_5
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5374..6069
DNA (696bp) protein (232aa)
exonuclease n=1 Tax=Thiobacillus denitrificans RepID=UPI0003707F9C
exonuclease
Tax=CG_Beta_01
OR_08142018_2_5m_0_2um_scaffold_460_6
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6215..6478
DNA (264bp) protein (88aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D9526
putative solute:sodium symporter small subunit
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
OR_08142018_2_5m_0_2um_scaffold_460_7
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6478..7758
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EC262
sodium symporter protein
Tax=GWA2_Gallionellales_60_142_curated
OR_08142018_2_5m_0_2um_scaffold_460_8
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9272..9571
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003776E77
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
OR_08142018_2_5m_0_2um_scaffold_460_trna_1
unknown

Not on your lists

9636..9708
DNA (73bp)
transferRNA Phe
OR_08142018_2_5m_0_2um_scaffold_460_9
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10055..11032)
DNA (978bp) protein (326aa)
Putative transposase n=2 Tax=Proteobacteria RepID=A9I2N3_BORPD
transposase
Putative transposase {ECO:0000313|EMBL:CAP44079.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
OR_08142018_2_5m_0_2um_scaffold_460_10
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11369..11599)
DNA (231bp) protein (77aa)
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
OR_08142018_2_5m_0_2um_scaffold_460_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11721..12899)
DNA (1179bp) protein (393aa)
S-adenosylmethionine synthase id=12498683 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
S-adenosylmethionine synthase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_2um_scaffold_460_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13062..14186)
DNA (1125bp) protein (375aa)
methylase n=1 Tax=Thiobacillus thioparus RepID=UPI0003609FE6
putative methyltransferase, Methylase of polypeptide chain release factors
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_2um_scaffold_460_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14299..15039)
DNA (741bp) protein (247aa)
pteridine reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B391D
pteridine reductase
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_2um_scaffold_460_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15113..16258
DNA (1146bp) protein (382aa)
Putative uncharacterized protein id=1335132 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_2um_scaffold_460_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16261..17118)
DNA (858bp) protein (286aa)
cation transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00036ADB4B
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_2um_scaffold_460_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17131..17592)
DNA (462bp) protein (154aa)
heat-shock protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003827700
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_460_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17579..18559)
DNA (981bp) protein (327aa)
PhoH-like protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFF2_THIDA
PhoH-like protein
PhoH-like protein {ECO:0000313|EMBL:AAZ98658.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_2_5m_0_2um_scaffold_460_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18556..19896)
DNA (1341bp) protein (447aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA id=12498675 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
tRNA-i(6)A37 thiotransferase enzyme MiaB
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_2um_scaffold_460_19
unknown

Not on your lists

19911..20231
DNA (321bp) protein (107aa)

This feature has no annotations

OR_08142018_2_5m_0_2um_scaffold_460_20
unknown

Not on your lists

20254..20325
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 21 items

View Taxonomy