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PLM1_100_b1_sep16_scaffold_4623

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_4623_1
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(247..2367)
DNA (2121bp) protein (707aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8)
Uncharacterized protein {ECO:0000313|EMBL:ETX01896.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Polyribonucleotide nucleotidyltransferase bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
PLM1_100_b1_sep16_scaffold_4623_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists


comp(2421..2690)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z4T1_DESAT
30S ribosomal protein S15
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM1_100_b1_sep16_scaffold_4623_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2782..3693)
DNA (912bp) protein (304aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
truB; tRNA pseudouridine synthase B (EC:5.4.99.-)
tRNA pseudouridine synthase B Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK6_9BACT
PLM1_100_b1_sep16_scaffold_4623_4
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3686..4069)
DNA (384bp) protein (128aa)
Ribosome-binding factor A Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PY50_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
ribosome-binding factor A
PLM1_100_b1_sep16_scaffold_4623_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4076..4357)
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00404.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Uncharacterized protein bin=GWC2_Deltaproteobacteria_42_51 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
PLM1_100_b1_sep16_scaffold_4623_6
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4390..6318)
DNA (1929bp) protein (643aa)
Translation initiation factor IF-2 {ECO:0000256|RuleBase:RU000644}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
infB; translation initiation factor IF-2
Translation initiation factor IF-2 bin=GWC2_Nitrospirae_57_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
PLM1_100_b1_sep16_scaffold_4623_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6976..8220)
DNA (1245bp) protein (415aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00395.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Transcription elongation factor NusA bin=GWB2_Proteobacteria_55_19 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
nusA; transcription elongation factor NusA
PLM1_100_b1_sep16_scaffold_4623_8
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8283..8750)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=RIMP_DICT6
YlxS
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM1_100_b1_sep16_scaffold_4623_9
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8933..9655)
DNA (723bp) protein (241aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Zinc metalloprotease (EC:3.4.24.-)
Putative Zinc metalloprotease Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJF5_9BACT
PLM1_100_b1_sep16_scaffold_4623_10
unknown

Not on your lists

9681..10085
DNA (405bp) protein (135aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_4623_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10069..10542)
DNA (474bp) protein (158aa)
Outer membrane lipoprotein carrier protein LolA Tax=delta proteobacterium MLMS-1 RepID=Q1NS79_9DELT
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
outer membrane lipoprotein carrier protein LolA
PLM1_100_b1_sep16_scaffold_4623_12
unknown

Not on your lists

11026..11301
DNA (276bp) protein (92aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_4623_13
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11865..12239)
DNA (375bp) protein (125aa)
Integral membrane sensor signal transduction histidine kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NK2_SOLUE
integral membrane sensor signal transduction histidine kinase
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:EMI57250.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
PLM1_100_b1_sep16_scaffold_4623_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12377..15073)
DNA (2697bp) protein (899aa)
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
DNA mismatch repair protein MutS bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
DNA mismatch repair protein MutS
PLM1_100_b1_sep16_scaffold_4623_15
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15105..15542)
DNA (438bp) protein (146aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Endoribonuclease YbeY Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=YBEY_GEOMG
hypothetical protein
PLM1_100_b1_sep16_scaffold_4623_16
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15564..16481)
DNA (918bp) protein (306aa)
PhoH-related ATPase bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
phoL; phoH-like protein
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM1_100_b1_sep16_scaffold_4623_17
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(16520..18475)
DNA (1956bp) protein (652aa)
[Protein-PII] uridylyltransferase (PII uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) (EC:2.7.7.59)
Bifunctional uridylyltransferase/uridylyl-removing enzyme Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMG6_9BACT
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM1_100_b1_sep16_scaffold_4623_18
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18468..19217)
DNA (750bp) protein (250aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Bifunctional uridylyltransferase/uridylyl-removing enzyme Tax=Geobacter metallireducens RepID=Q39VR4_GEOMG
glnD; nitrogen regulatory protein P-II uridylyltransferase, GlnD
PLM1_100_b1_sep16_scaffold_4623_19
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19229..20119)
DNA (891bp) protein (297aa)
Tyrosine recombinase XerD Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I484_DESAP
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
tyrosine recombinase XerD
PLM1_100_b1_sep16_scaffold_4623_20
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20315..20593
DNA (279bp) protein (93aa)
hypothetical protein Tax=Caldibacillus debilis RepID=UPI00036B9658
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
30S ribosomal protein S20
PLM1_100_b1_sep16_scaffold_4623_21
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20580..21137)
DNA (558bp) protein (186aa)
DNA polymerase III, delta subunit Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A4P6_PELCD
Uncharacterized protein {ECO:0000313|EMBL:ETX00381.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
Displaying 21 items

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