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PLM1_100_b1_sep16_scaffold_10603

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_10603_1

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3..167
DNA (165bp) protein (55aa)
Marine sediment metagenome DNA, contig: S12H4_L06638 {ECO:0000313|EMBL:GAI72940.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM1_100_b1_sep16_scaffold_10603_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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270..1220
DNA (951bp) protein (317aa)
Binding-protein-dependent transport systems inner membrane component bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_b1_sep16_scaffold_10603_3
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1217..2059
DNA (843bp) protein (281aa)
Binding-protein-dependent transport systems inner membrane component bin=GWF2_Methylomirabilis_70_14 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter permease
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM1_100_b1_sep16_scaffold_10603_4
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(2166..2387)
DNA (222bp) protein (74aa)
YcfA family protein Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K2A0_DEHLB
Uncharacterized protein {ECO:0000313|EMBL:KHE93965.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_10603_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(2387..2629)
DNA (243bp) protein (81aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMT4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68034.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM1_100_b1_sep16_scaffold_10603_6
unknown

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comp(2738..3331)
DNA (594bp) protein (198aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_10603_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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3574..4449
DNA (876bp) protein (292aa)
Phage integrase family protein bin=GWC2_Methylomirabilis_70_16 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phage integrase family protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_b1_sep16_scaffold_10603_8
unknown

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comp(4518..4916)
DNA (399bp) protein (133aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_10603_9
unknown

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comp(5010..5402)
DNA (393bp) protein (131aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_10603_10

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6032..7348
DNA (1317bp) protein (439aa)
hypothetical protein Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3CC72
Uncharacterized protein {ECO:0000313|EMBL:KKL97914.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase
PLM1_100_b1_sep16_scaffold_10603_11
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7444..7989)
DNA (546bp) protein (182aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI00037C048E
PglY {ECO:0000313|EMBL:EAR23329.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
putative phage resistance protein
PLM1_100_b1_sep16_scaffold_10603_12
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

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comp(8065..8301)
DNA (237bp) protein (79aa)
HicB family protein Tax=mine drainage metagenome RepID=T1CUG5_9ZZZZ
HicB family protein
Tax=RBG_13_RIF03_48_7_curated
PLM1_100_b1_sep16_scaffold_10603_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(8298..8495)
DNA (198bp) protein (66aa)
YcfA family protein bin=GWD2_Deltaproteobacteria_55_8 species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
YcfA family protein
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM1_100_b1_sep16_scaffold_10603_14
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8499..9479)
DNA (981bp) protein (327aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI000373A7DE
Uncharacterized protein {ECO:0000313|EMBL:EPZ14969.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
hypothetical protein
Displaying 14 items

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