ggKbase home page

PLM1_100_b1_sep16_scaffold_583

Search features with annotation key words

Displaying 24 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_583_1
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..402
DNA (402bp) protein (134aa)
membrane protein Tax=Ralstonia solanacearum RepID=UPI0001816DDF
Putative membrane protein {ECO:0000313|EMBL:EXI68877.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
conserved membrane protein of unknown function
PLM1_100_b1_sep16_scaffold_583_2
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

399..1835
DNA (1437bp) protein (479aa)
Uncharacterized protein Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RR87_ACCPU
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM1_100_b1_sep16_scaffold_583_3
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1874..2854
DNA (981bp) protein (327aa)
Alcohol dehydrogenase zinc-binding domain protein Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HTD9_CYAP4
alcohol dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
PLM1_100_b1_sep16_scaffold_583_4
unknown

Not on your lists

2979..3425
DNA (447bp) protein (149aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_583_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

3541..3969
DNA (429bp) protein (143aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P936_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK44018.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM1_100_b1_sep16_scaffold_583_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4091..4447
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Collimonas fungivorans (strain Ter331) RepID=G0A9N4_COLFT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM1_100_b1_sep16_scaffold_583_7
RLO_PLX_64_10, Bacteria

Not on your lists

4533..5063
DNA (531bp) protein (177aa)
id=1938459 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM1_100_b1_sep16_scaffold_583_8
RLO_PLX_64_10, Bacteria

Not on your lists

5060..5263
DNA (204bp) protein (68aa)
hypothetical protein VspiD_05425 bin=GWD2_Nitrospirae-related_57_8 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM1_100_b1_sep16_scaffold_583_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5366..5875)
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PIG8_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM1_100_b1_sep16_scaffold_583_10
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5932..6297)
DNA (366bp) protein (122aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QGJ0_AZOSU
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM1_100_b1_sep16_scaffold_583_11
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6386..6775
DNA (390bp) protein (130aa)
hypothetical protein Tax=Singularimonas variicoloris RepID=UPI00036083E6
Uncharacterized protein {ECO:0000313|EMBL:KIF83099.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM1_100_b1_sep16_scaffold_583_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6793..7590
DNA (798bp) protein (266aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00036371C7
putative extracellular solute-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM1_100_b1_sep16_scaffold_583_13
RLO_PLX_64_10, Bacteria

Not on your lists

7696..8775
DNA (1080bp) protein (360aa)
Uncharacterized protein Tax=Pseudomonas sp. EGD-AK9 RepID=U2B805_9PSED
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM1_100_b1_sep16_scaffold_583_14
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8812..9135)
DNA (324bp) protein (108aa)
Branched-chain amino acid transport Tax=Ralstonia sp. PBA RepID=I9W0W7_9RALS
Branched-chain amino acid transport {ECO:0000313|EMBL:EIZ02047.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
conserved membrane protein of unknown function
PLM1_100_b1_sep16_scaffold_583_15
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9137..9862)
DNA (726bp) protein (242aa)
Membrane protein Tax=Bordetella holmesii RepID=M5NKL4_9BORD
Branched-chain amino acid permease {ECO:0000313|EMBL:KHA79847.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
azlC family protein
PLM1_100_b1_sep16_scaffold_583_16
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9929..10357)
DNA (429bp) protein (143aa)
Uncharacterized protein bin=GWB2_Nitrospirae_rel_47_37 species=Thauera aminoaromatica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=CG_Syntroph_01
PLM1_100_b1_sep16_scaffold_583_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10367..11722)
DNA (1356bp) protein (452aa)
Uncharacterized protein bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM1_100_b1_sep16_scaffold_583_18
unknown

Not on your lists

11996..12601
DNA (606bp) protein (202aa)
hypothetical protein Tax=Uliginosibacterium gangwonense RepID=UPI0003813448
PLM1_100_b1_sep16_scaffold_583_19
unknown

Not on your lists

comp(12602..12796)
DNA (195bp) protein (65aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_583_20
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12874..14004)
DNA (1131bp) protein (377aa)
DNA recombination protein RmuC Tax=Nitrosospira sp. APG3 RepID=M5DV20_9PROT
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM1_100_b1_sep16_scaffold_583_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14092..16578)
DNA (2487bp) protein (829aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QLY5_AZOSU
putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM1_100_b1_sep16_scaffold_583_22
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16588..17238)
DNA (651bp) protein (217aa)
ABC transporter ATP-binding protein YvcR Tax=Nitrosospira sp. APG3 RepID=M5DKX7_9PROT
ABC transporter-like protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM1_100_b1_sep16_scaffold_583_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17288..17911
DNA (624bp) protein (208aa)
putative lysophospholipase (EC:3.1.1.5)
Putative lysophospholipase Tax=Ralstonia solanacearum RepID=D8NTG9_RALSL
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM1_100_b1_sep16_scaffold_583_24
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18399..18968
DNA (570bp) protein (190aa)
YD repeat protein Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WM31_VEREI
YD repeat-containing protein
YD repeat protein {ECO:0000313|EMBL:ABM58688.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Displaying 24 items

View Taxonomy