ggKbase home page

PLM1_100_b1_sep16_scaffold_1084

Search features with annotation key words

Displaying 24 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_1084_1
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..383
DNA (381bp) protein (127aa)
Class II Aldolase and Adducin N-terminal domain protein Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XXI5_9RHIZ
Class II Aldolase and Adducin N-terminal domain protein {ECO:0000313|EMBL:EMS42353.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
class II aldolase/adducin family protein
PLM1_100_b1_sep16_scaffold_1084_2
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(883..1368)
DNA (486bp) protein (162aa)
Uncharacterized protein {ECO:0000313|EMBL:KIF25780.1}; species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
PLM1_100_b1_sep16_scaffold_1084_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1914..2219
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AFC9_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM1_100_b1_sep16_scaffold_1084_4
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2728..3879)
DNA (1152bp) protein (384aa)
hypothetical protein Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002ED2137
vitamin-B12 independent methionine synthase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM1_100_b1_sep16_scaffold_1084_5
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3912..5078)
DNA (1167bp) protein (389aa)
hypothetical protein Tax=Thiomonas sp. FB-6 RepID=UPI0003750AAB
wzxE; O-antigen transporter WzxE
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM1_100_b1_sep16_scaffold_1084_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5156..6862)
DNA (1707bp) protein (569aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) bin=GWC2_Nitrospirae_57_13 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
signal peptide
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM1_100_b1_sep16_scaffold_1084_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6880..7335)
DNA (456bp) protein (152aa)
Response regulator, receiver Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CNG8_MYXFH
response regulator, receiver
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM1_100_b1_sep16_scaffold_1084_8
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7332..9551)
DNA (2220bp) protein (740aa)
Uncharacterized protein Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXZ6_9BACT
PAS/PAC sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM1_100_b1_sep16_scaffold_1084_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9715..10641)
DNA (927bp) protein (309aa)
Putative ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46ML3_CUPPJ
putative ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM1_100_b1_sep16_scaffold_1084_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10662..12329)
DNA (1668bp) protein (556aa)
ABC transporter ATP-binding protein Tax=Cupriavidus sp. HPC(L) RepID=V2KJH1_9BURK
ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM1_100_b1_sep16_scaffold_1084_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12450..12872
DNA (423bp) protein (141aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_1084_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12918..13136)
DNA (219bp) protein (73aa)
Copper-translocating P-type ATPase Tax=Burkholderia vietnamiensis AU4i RepID=U2H0X2_BURVI
copper/silver efflux P-type ATPase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM1_100_b1_sep16_scaffold_1084_13
Gordonia amarae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13165..13866)
DNA (702bp) protein (234aa)
Zn-dependent alcohol dehydrogenase (EC:1.1.1.1)
Putative glutathione-dependent formaldehyde dehydrogenase Tax=Gordonia amarae NBRC 15530 RepID=G7GLE5_9ACTO
Putative glutathione-dependent formaldehyde dehydrogenase {ECO:0000313|EMBL:GAB04420.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
PLM1_100_b1_sep16_scaffold_1084_14
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14360..15040)
DNA (681bp) protein (227aa)
acyl-CoA-binding protein Tax=Janthinobacterium sp. CG3 RepID=UPI000345DF29
Uncharacterized protein {ECO:0000313|EMBL:CDO58732.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
acyl-coA-binding protein ACBP
PLM1_100_b1_sep16_scaffold_1084_15
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15337..16191)
DNA (855bp) protein (285aa)
alpha/beta hydrolase Tax=Halomonas sp. KM-1 RepID=UPI000287F837
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM1_100_b1_sep16_scaffold_1084_16
unknown

Not on your lists

comp(16994..17515)
DNA (522bp) protein (174aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1084_17
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17490..18644)
DNA (1155bp) protein (385aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00035CC41D
two component transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM1_100_b1_sep16_scaffold_1084_18
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18830..19540)
DNA (711bp) protein (237aa)
hypothetical protein Tax=Thiobacillus denitrificans RepID=UPI000374F6EE
ECF family RNA polymerase sigma factor
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM1_100_b1_sep16_scaffold_1084_19
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19564..19875)
DNA (312bp) protein (104aa)
MtN3 and saliva related transmembrane protein; K15383 MtN3 and saliva related transmembrane protein bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM1_100_b1_sep16_scaffold_1084_20
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19956..20195)
DNA (240bp) protein (80aa)
Iron sulphur domain-containing, CDGSH-type Tax=Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) RepID=D3SNY4_THEAH
CDGSH-type iron sulfur domain-containing protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM1_100_b1_sep16_scaffold_1084_21
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(20205..20861)
DNA (657bp) protein (219aa)
hypothetical protein Tax=Bacillus sp. 123MFChir2 RepID=UPI00036A3E2A
glycosyltransferase
Tax=GWA2_WOR_2_47_8_curated
PLM1_100_b1_sep16_scaffold_1084_22
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21083..22462)
DNA (1380bp) protein (460aa)
Putative lipoprotein Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SI29_NOCSJ
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:ABL81464.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM1_100_b1_sep16_scaffold_1084_23
unknown

Not on your lists

comp(22622..22864)
DNA (243bp) protein (81aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1084_24
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22874..23035)
DNA (162bp) protein (54aa)
Uncharacterized protein Tax=Azoarcus sp. KH32C RepID=H0PUX7_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL24328.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
Displaying 24 items

View Taxonomy