ggKbase home page

PLM1_100_b1_sep16_scaffold_8188

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_8188_1
unknown

Not on your lists

comp(2..64)
DNA (63bp) protein (21aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_8188_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

224..1051
DNA (828bp) protein (276aa)
ABC transporter ATP-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_8188_3
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1063..1923
DNA (861bp) protein (287aa)
Binding-protein-dependent transport system inner membrane protein bin=GWD2_Deltaproteobacteria_55_8 species=Nitratireductor pacificus genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
binding-protein-dependent transport system inner membrane protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM1_100_b1_sep16_scaffold_8188_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1940..2998
DNA (1059bp) protein (353aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Pseudomonas fulva genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_8188_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3159..3791)
DNA (633bp) protein (211aa)
Beta-lactamase-like bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Beta-lactamase-like
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_100_b1_sep16_scaffold_8188_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3944..4384)
DNA (441bp) protein (147aa)
Rhodanese domain protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZK7_HALO1
rhodanese
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_8188_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4489..5259)
DNA (771bp) protein (257aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_8188_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5460..6068)
DNA (609bp) protein (203aa)
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Cob(I)yrinic acid a,c-diamide adenosyltransferase bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_100_b1_sep16_scaffold_8188_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6150..7538)
DNA (1389bp) protein (463aa)
Amino acid permease-associated region bin=GWD2_Deltaproteobacteria_55_8 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amino acid permease-associated protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 9 items

View Taxonomy