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PLM1_100_b1_sep16_scaffold_257

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_257_1
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..385
DNA (384bp) protein (128aa)
RND efflux system, outer membrane lipoprotein, NodT family Tax=Methylomonas methanica (strain MC09) RepID=G0A1I9_METMM
Membrane protein {ECO:0000313|EMBL:KHD30604.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
NodT family RND efflux system outer membrane lipoprotein
PLM1_100_b1_sep16_scaffold_257_2
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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780..1250
DNA (471bp) protein (157aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Methylobacter tundripaludum SV96 RepID=G3J1H1_9GAMM
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EGW21043.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
Glyoxalase/bleomycin resistance protein/dioxygenase (Dioxygenase)
PLM1_100_b1_sep16_scaffold_257_3
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

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1635..3131
DNA (1497bp) protein (499aa)
Arabinose efflux permease family protein Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C585_DESTA
MFS transporter {ECO:0000313|EMBL:KIF37299.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
arabinose efflux permease family protein
PLM1_100_b1_sep16_scaffold_257_4
unknown

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3745..3912
DNA (168bp) protein (56aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_257_5
unknown

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3944..4357
DNA (414bp) protein (138aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_257_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4648..4983
DNA (336bp) protein (112aa)
Thioredoxin Tax=Cyanobacterium aponinum (strain PCC 10605) RepID=K9Z7Z4_CYAAP
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
thioredoxin
PLM1_100_b1_sep16_scaffold_257_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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4996..5418
DNA (423bp) protein (141aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_257_8
unknown

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5478..5669
DNA (192bp) protein (64aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_257_9
unknown

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5683..5925
DNA (243bp) protein (81aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_257_10
unknown

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6500..6994
DNA (495bp) protein (165aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_257_11
unknown

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7077..7184
DNA (108bp) protein (36aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_257_12
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

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7374..7709
DNA (336bp) protein (112aa)
putative molybdopterin-guanine dinucleotide biosynthesis protein A Tax=Gemmata obscuriglobus RepID=UPI00016C47B8
mobA; molybdopterin-guanine dinucleotide biosynthesis protein A
Tax=CG_Solirubrobact_01
PLM1_100_b1_sep16_scaffold_257_trna_1
unknown

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8086..8165
DNA (80bp)
transferRNA Leu
PLM1_100_b1_sep16_scaffold_257_13
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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8290..9615
DNA (1326bp) protein (442aa)
Trigger factor bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
tig; ribosome-associated peptidylprolyl cis-trans isomerase, FKBP-type (trigger factor)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_257_14
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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9649..10251
DNA (603bp) protein (201aa)
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit bin=GWD2_Deltaproteobacteria_55_8 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_257_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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10275..11528
DNA (1254bp) protein (418aa)
ATP-dependent Clp protease ATP-binding subunit ClpX bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ATP-dependent protease
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_257_16
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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11541..14006
DNA (2466bp) protein (822aa)
anti-sigma H sporulation factor LonB (EC:3.4.21.53)
Lon protease bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM1_100_b1_sep16_scaffold_257_trna_2
unknown

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14463..14534
DNA (72bp)
transferRNA Val
PLM1_100_b1_sep16_scaffold_257_trna_3
unknown

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14564..14637
DNA (74bp)
transferRNA Asp
PLM1_100_b1_sep16_scaffold_257_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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14686..15111
DNA (426bp) protein (142aa)
50S ribosomal protein L13 bin=GWD2_Deltaproteobacteria_55_8 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplM; 50S ribosomal protein L13
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_257_18
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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15125..15517
DNA (393bp) protein (131aa)
30S ribosomal protein S9 bin=GWD2_Deltaproteobacteria_55_8 species=Idiomarina xiamenensis genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S9
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_257_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15815..16924)
DNA (1110bp) protein (370aa)
Permease bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
permease
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_100_b1_sep16_scaffold_257_20
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16933..18132)
DNA (1200bp) protein (400aa)
Permease YjgP/YjgQ family protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
membrane protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_100_b1_sep16_scaffold_257_21
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18203..18964
DNA (762bp) protein (254aa)
RNA methyltransferase, TrmH family, group 3 bin=GWD2_Deltaproteobacteria_55_8 species=Paenibacillus sp. genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
TrmH family RNA methyltransferase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM1_100_b1_sep16_scaffold_257_trna_4
unknown

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19222..19293
DNA (72bp)
transferRNA Thr
PLM1_100_b1_sep16_scaffold_257_trna_5
unknown

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19383..19464
DNA (82bp)
transferRNA Tyr
PLM1_100_b1_sep16_scaffold_257_trna_6
unknown

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19476..19548
DNA (73bp)
transferRNA Gly
PLM1_100_b1_sep16_scaffold_257_trna_7
unknown

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19643..19715
DNA (73bp)
transferRNA Thr
PLM1_100_b1_sep16_scaffold_257_22
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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19797..20987
DNA (1191bp) protein (397aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_257_23
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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21017..21169
DNA (153bp) protein (51aa)
50S ribosomal protein L33 bin=GWD2_Deltaproteobacteria_55_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L33
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Displaying items 1-30 of 41 in total

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