ggKbase home page

PLM1_100_b1_sep16_scaffold_718

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_718_1
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..675
DNA (675bp) protein (225aa)
Beta-lactamase bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative esterase, beta-lactamase family
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM1_100_b1_sep16_scaffold_718_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

672..2093
DNA (1422bp) protein (474aa)
UDP-N-acetylmuramate bin=GWC2_Deltaproteobacteria_66_88 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_718_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2082..2321)
DNA (240bp) protein (80aa)
id=1837247 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_100_b1_sep16_scaffold_718_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2352..2855)
DNA (504bp) protein (168aa)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_718_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2879..4051)
DNA (1173bp) protein (391aa)
yfdZ; aminotransferase (EC:2.6.1.-)
LL-diaminopimelate aminotransferase bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_718_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4165..4662
DNA (498bp) protein (166aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_718_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4888..5607)
DNA (720bp) protein (240aa)
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_100_b1_sep16_scaffold_718_trna_1
unknown

Not on your lists

comp(5763..5836)
DNA (74bp)
transferRNA Met
PLM1_100_b1_sep16_scaffold_718_8
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5897..6322
DNA (426bp) protein (142aa)
NUDIX hydrolase Tax=Desulfococcus multivorans DSM 2059 RepID=S7TBQ8_DESML
nudF2; NUDIX family hydrolase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_100_b1_sep16_scaffold_718_9
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6338..7534)
DNA (1197bp) protein (399aa)
Aspartate aminotransferase Tax=Smithella sp. ME-1 RepID=V4FBJ8_9DELT
aspartate aminotransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_718_10
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7547..8038)
DNA (492bp) protein (164aa)
Phosphopantetheine adenylyltransferase Tax=Smithella sp. ME-1 RepID=V4FHL7_9DELT
pantetheine-phosphate adenylyltransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_718_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8050..8622)
DNA (573bp) protein (191aa)
Putative methyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4F9_GEOUR
putative methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_718_12
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8684..9094)
DNA (411bp) protein (137aa)
NADPH:quinone reductase (EC:1.6.5.5)
alcohol dehydrogenase zinc-binding domain protein bin=bin5_DeltaP species=Haladaptatus paucihalophilus genus=Haladaptatus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin5_DeltaP organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_718_13
GWA2_Nitrospirae_42_11_curated, Nitrospirae, Bacteria

Not on your lists

comp(9116..9466)
DNA (351bp) protein (117aa)
Iron-sulfur cluster assembly accessory protein Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QYR3_CHLT3
iron-sulfur cluster assembly accessory protein
Tax=GWA2_Nitrospirae_42_11_curated
PLM1_100_b1_sep16_scaffold_718_14
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9545..10471)
DNA (927bp) protein (309aa)
Signal recognition particle receptor FtsY bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
signal recognition particle-docking protein FtsY
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_718_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10548..14102)
DNA (3555bp) protein (1185aa)
Chromosome partition protein Smc bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
chromosome segregation protein SMC
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_718_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14351..14983)
DNA (633bp) protein (211aa)
HNH endonuclease bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
HNH endonuclease
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_718_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15223..16734
DNA (1512bp) protein (504aa)
RNAse G bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Rne/Rng family ribonuclease
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_718_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16841..17074)
DNA (234bp) protein (78aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 19 items

View Taxonomy