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PLM1_100_b1_sep16_scaffold_1449

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_1449_1
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..583)
DNA (582bp) protein (194aa)
hemin ABC transporter permease Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AD06
transport system permease
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM1_100_b1_sep16_scaffold_1449_2
Peptococcaceae bacterium SCADC1_2_3, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(564..1481)
DNA (918bp) protein (306aa)
Periplasmic binding protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLW7_SYNFM
Uncharacterized protein {ECO:0000313|EMBL:KFD41523.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium SCADC1_2_3.;"
periplasmic binding protein
PLM1_100_b1_sep16_scaffold_1449_3
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1478..2209)
DNA (732bp) protein (244aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000255|HAMAP-Rule:MF_00719}; EC=2.7.8.26 {ECO:0000255|HAMAP-Rule:MF_00719};; Cobalamin synthase {ECO:0000255|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00719}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
Cobalamin synthase bin=GWD2_Deltaproteobacteria_55_8 species=Dethiosulfovibrio peptidovorans genus=Dethiosulfovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cobalamin 5'-phosphate synthase
PLM1_100_b1_sep16_scaffold_1449_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(2206..3261)
DNA (1056bp) protein (352aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Tax=Geobacter sulfurreducens RepID=COBT_GEOSL
cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
Tax=RBG_16_Nitrospirae_64_22_curated
PLM1_100_b1_sep16_scaffold_1449_5
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(3252..3788)
DNA (537bp) protein (179aa)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase Tax=Bradyrhizobium sp. WSM471 RepID=H5YFU7_9BRAD
cobP; cobalamin biosynthesis protein CobP
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PLM1_100_b1_sep16_scaffold_1449_6
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(3793..4782)
DNA (990bp) protein (330aa)
L-threonine O-3-phosphate decarboxylase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDT4_GEOUR
putative L-threonine-O-3-phosphate decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PLM1_100_b1_sep16_scaffold_1449_7
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(4887..5855)
DNA (969bp) protein (323aa)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI0003686801
cobD; cobalamin biosynthesis protein CobD
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PLM1_100_b1_sep16_scaffold_1449_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5951..7081)
DNA (1131bp) protein (377aa)
Cob(II)yrinic acid a,c-diamide reductase {ECO:0000313|EMBL:CCD00078.1}; EC=1.16.8.1 {ECO:0000313|EMBL:CCD00078.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Cob(II)yrinic acid a,c-diamide reductase Tax=Azospirillum brasilense Sp245 RepID=G8ARL7_AZOBR
bluB; cob(II)yrinic acid a,c-diamide reductase
PLM1_100_b1_sep16_scaffold_1449_9
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(7324..8274)
DNA (951bp) protein (317aa)
cobyric acid synthase CobQ (EC:6.3.5.10)
Cobyric acid synthase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEE8_CHLTF
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM1_100_b1_sep16_scaffold_1449_10
unknown

Not on your lists

comp(8996..9313)
DNA (318bp) protein (106aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1449_11
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9335..11251)
DNA (1917bp) protein (639aa)
Cobalamin uptake ligand-gated TonB-dependent outer membrane channel Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A7D0_PELCD
btuB; cobalamin uptake ligand-gated TonB-dependent outer membrane channel
Cobalamin uptake ligand-gated TonB-dependent outer membrane channel {ECO:0000313|EMBL:ABA87714.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
PLM1_100_b1_sep16_scaffold_1449_12
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11596..12378)
DNA (783bp) protein (261aa)
Predicted protein bin=GWD2_Deltaproteobacteria_55_8 species=Oxalobacter formigenes genus=Oxalobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
TonB-like protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM1_100_b1_sep16_scaffold_1449_13
unknown

Not on your lists

12799..13125
DNA (327bp) protein (109aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1449_14
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13122..13289)
DNA (168bp) protein (56aa)
Conserved hypothetical membrane protein, auxin efflux carrier family bin=GWB2_Proteobacteria_55_19 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
auxin efflux carrier family protein
Tax=GWB2_Deltaproteobacteria_55_19_curated
PLM1_100_b1_sep16_scaffold_1449_15
unknown

Not on your lists

comp(13286..13585)
DNA (300bp) protein (100aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1449_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13608..14234)
DNA (627bp) protein (209aa)
Cobalamin synthase bin=GWD2_Deltaproteobacteria_55_8 species=Dethiosulfovibrio peptidovorans genus=Dethiosulfovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cobalamin 5''-phosphate synthase/cobalamin synthase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_1449_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14547..16976
DNA (2430bp) protein (810aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_1449_18
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17070..19535
DNA (2466bp) protein (822aa)
DNA gyrase subunit A bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
gyrA; DNA gyrase subunit A
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_1449_19
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20346..20768
DNA (423bp) protein (141aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
DNA gyrase subunit A bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_1449_20
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20843..21004
DNA (162bp) protein (54aa)
50S ribosomal protein L34 bin=GWA2_Deltaproteo_65_63 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
rpmH; 50S ribosomal protein L34
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 20 items

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