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PLM1_100_b1_sep16_scaffold_1995

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_1995_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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1..354
DNA (354bp) protein (118aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11E80_MESSB
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM1_100_b1_sep16_scaffold_1995_2
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(419..556)
DNA (138bp) protein (46aa)
Signal transduction response regulator bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM1_100_b1_sep16_scaffold_1995_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(562..1365)
DNA (804bp) protein (268aa)
Signal transduction response regulator bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
signal transduction response regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_1995_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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1577..2581
DNA (1005bp) protein (335aa)
Putative uncharacterized protein bin=GWF2_Syntrophobacterales_56_9 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_1995_5
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(2653..3633)
DNA (981bp) protein (327aa)
Iron-binding periplasmic protein bin=GWD2_Deltaproteobacteria_55_8 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM1_100_b1_sep16_scaffold_1995_6
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(3689..4696)
DNA (1008bp) protein (336aa)
Iron-binding periplasmic protein bin=GWD2_Deltaproteobacteria_55_8 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM1_100_b1_sep16_scaffold_1995_7
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5339..5773
DNA (435bp) protein (145aa)
Signal transduction histidine kinase Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TG16_HELMI
signal transduction histidine kinase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM1_100_b1_sep16_scaffold_1995_8
R_Nitrospinae_39_10, Nitrospinae, Bacteria

Not on your lists

5770..6096
DNA (327bp) protein (109aa)
Hypothetical cytosolic protein bin=GWB2_Nitrospirae_rel_47_37 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
cytoplasmic protein
Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
PLM1_100_b1_sep16_scaffold_1995_9
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6089..6457
DNA (369bp) protein (123aa)
Transcriptional regulator, NifA subfamily, Fis Family Tax=Microscilla marina ATCC 23134 PF6_9BACT">RepID=A1ZPF6_9BACT
Transcriptional regulator, NifA subfamily, Fis Family {ECO:0000313|EMBL:EAY27695.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
CheY-like receiver and HD-GYP domain-containing response regulator
PLM1_100_b1_sep16_scaffold_1995_10
Desulfococcus oleovorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6506..8758
DNA (2253bp) protein (751aa)
Response regulator receiver protein Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZX41_DESOH
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABW66897.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus oleovorans (strain DSM 6200 / Hxd3).;"
PLM1_100_b1_sep16_scaffold_1995_11
Bacteriovorax sp. DB6_IX, Bacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8769..9947
DNA (1179bp) protein (393aa)
Response regulator receiver domain protein Tax=Bacteriovorax sp. DB6_IX RepID=T0T2T0_9DELT
Response regulator receiver domain protein {ECO:0000313|EMBL:EQC51528.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bacteriovoracaceae; Bacteriovorax.;" source="Bacteriovorax sp. DB6_IX.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
PLM1_100_b1_sep16_scaffold_1995_12
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

10301..10843
DNA (543bp) protein (181aa)
hypothetical protein bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=bin8_Chloro organism_group=Chloroflexi
CHRD domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM1_100_b1_sep16_scaffold_1995_13
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

10939..11496
DNA (558bp) protein (186aa)
Putative Zn-dependent hydrolase of beta-lactamase Tax=Acidovorax sp. CF316 RepID=J0KUM3_9BURK
metal-dependent hydrolase-like protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM1_100_b1_sep16_scaffold_1995_14
unknown

Not on your lists

12415..12540
DNA (126bp) protein (42aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_1995_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12535..13242)
DNA (708bp) protein (236aa)
Putative Uncharacterized protein conserved in bacteria bin=GWD2_Deltaproteobacteria_55_8 species=Cupriavidus pinatubonensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_b1_sep16_scaffold_1995_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13267..14280)
DNA (1014bp) protein (338aa)
Iron-binding periplasmic protein bin=GWD2_Deltaproteobacteria_55_8 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM1_100_b1_sep16_scaffold_1995_17
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14382..14795)
DNA (414bp) protein (138aa)
Acyl-CoA dehydrogenase bin=GWD2_Deltaproteobacteria_55_8 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
acyl-CoA dehydrogenase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Displaying 17 items

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