ggKbase home page

PLM1_100_b1_sep16_scaffold_47

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_47_1
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(233..1279)
DNA (1047bp) protein (349aa)
hypothetical protein Tax=Frankia sp. BMG5.12 RepID=UPI0003807EE0
Transposase {ECO:0000313|EMBL:KJE19353.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
transposase IS66
PLM1_100_b1_sep16_scaffold_47_2
unknown

Not on your lists

2487..2669
DNA (183bp) protein (61aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_47_trna_1
unknown

Not on your lists

comp(2799..2883)
DNA (85bp)
transferRNA Ser
PLM1_100_b1_sep16_scaffold_47_3
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3109..4566
DNA (1458bp) protein (486aa)
sugar hydrolase Tax=Streptomyces sp. ScaeMP-e10 RepID=UPI000373C2AF
sugar hydrolase
Sugar hydrolase {ECO:0000313|EMBL:AJF65336.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
PLM1_100_b1_sep16_scaffold_47_4
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4844..6946
DNA (2103bp) protein (701aa)
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:CCH22030.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CCH22030.1};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
DNA polymerase III subunit gamma/tau Tax=Salinispora arenicola RepID=UPI0003754197
DNA polymerase III subunits gamma and tau
PLM1_100_b1_sep16_scaffold_47_5
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7100..7405
DNA (306bp) protein (102aa)
Nucleoid-associated protein MILUP08_46813 Tax=Micromonospora lupini str. Lupac 08 RepID=I0LDY1_9ACTO
Nucleoid-associated protein MILUP08_46813 {ECO:0000256|HAMAP-Rule:MF_00274}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_47_6
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7406..8005
DNA (600bp) protein (200aa)
Recombination protein RecR Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WBX2_9ACTO
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
putative recombination and repair protein
PLM1_100_b1_sep16_scaffold_47_7
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8266..9294)
DNA (1029bp) protein (343aa)
Putative Threonine aldolase Tax=Streptomyces viridochromogenes Tue57 RepID=L8PIR4_STRVR
Putative Threonine aldolase {ECO:0000313|EMBL:ELS55272.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes Tue57.;"
L-allo-threonine aldolase
PLM1_100_b1_sep16_scaffold_47_8
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9613..11262
DNA (1650bp) protein (550aa)
peptide ABC transporter substrate-binding protein Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDC22
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:EXG79180.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
dipeptide/oligopeptide/nickel ABC transporter periplasmic protein
PLM1_100_b1_sep16_scaffold_47_9
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11357..12361
DNA (1005bp) protein (335aa)
peptide ABC transporter permease Tax=Amycolatopsis nigrescens RepID=UPI000379E4C5
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EXG79181.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
dppB; dipeptide transport system permease protein
PLM1_100_b1_sep16_scaffold_47_10
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12358..13293
DNA (936bp) protein (312aa)
ABC transporter permease Tax=Amycolatopsis nigrescens RepID=UPI000372F7F0
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EXG79182.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
appCC; dipeptide/oligopeptide/nickel ABC transporter permease
PLM1_100_b1_sep16_scaffold_47_11
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13299..14288
DNA (990bp) protein (330aa)
Oligopeptide transport ATP-binding protein OppD Tax=Amycolatopsis azurea DSM 43854 RepID=M2Q836_9PSEU
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:EMD22861.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
peptide/nickel transport system ATP-binding protein
PLM1_100_b1_sep16_scaffold_47_12
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14285..15457
DNA (1173bp) protein (391aa)
peptide ABC transporter ATPase Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002627E4D
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EXG79184.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
D-methionine ABC transporter, ATP-binding protein
PLM1_100_b1_sep16_scaffold_47_13
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15513..16190
DNA (678bp) protein (226aa)
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase {ECO:0000313|EMBL:EXG79191.1}; EC=4.1.2.17 {ECO:0000313|EMBL:EXG79191.1};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein Tax=Nocardiopsis potens RepID=UPI00035C745C
class II aldolase/adducin family protein
PLM1_100_b1_sep16_scaffold_47_14
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16191..16655
DNA (465bp) protein (155aa)
NUDIX hydrolase Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PZ36_KRIFD
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADB31830.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM1_100_b1_sep16_scaffold_47_15
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16672..16986)
DNA (315bp) protein (105aa)
Putative uncharacterized protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D581_MYXXD
Uncharacterized protein {ECO:0000313|EMBL:KJB91694.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_47_16
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(16983..18035)
DNA (1053bp) protein (351aa)
Peptidase M4 Tax=Pseudomonas fluorescens EGD-AQ6 RepID=U1UYV4_PSEFL
peptidase M4
Tax=RBG_16_Acidobacteria_68_9_curated
PLM1_100_b1_sep16_scaffold_47_17
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18502..20217)
DNA (1716bp) protein (572aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase Tax=Modestobacter marinus (strain BC501) RepID=I4ERM7_MODMB
PLM1_100_b1_sep16_scaffold_47_18
Streptomyces coelicolor, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20662..21822
DNA (1161bp) protein (387aa)
Putative branched amino acid binding secreted protein Tax=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) RepID=Q9FBZ7_STRCO
SC8A11.13; branched amino acid binding hypothetical protein
Putative branched amino acid binding secreted protein {ECO:0000313|EMBL:CAC01585.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group.;" source="Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145).;"
PLM1_100_b1_sep16_scaffold_47_19
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21906..22370)
DNA (465bp) protein (155aa)
Putative uncharacterized protein Tax=Salinispora arenicola RepID=A8M2R4_SALAI
Putative GTPase {ECO:0000313|EMBL:EXG79194.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_47_20
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22501..22860)
DNA (360bp) protein (120aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00036A3FDB
Uncharacterized protein {ECO:0000313|EMBL:EXG79195.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_47_21
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22877..23299)
DNA (423bp) protein (141aa)
dynein regulation protein LC7 Tax=Streptomyces scabrisporus RepID=UPI000362E771
Uncharacterized protein {ECO:0000313|EMBL:EXG79196.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Roadblock/LC7 family protein
PLM1_100_b1_sep16_scaffold_47_22
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23296..26607)
DNA (3312bp) protein (1104aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
ATPase Tax=Salinispora pacifica RepID=UPI00036AFBB0
histidine kinase
PLM1_100_b1_sep16_scaffold_47_23
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26908..27765)
DNA (858bp) protein (286aa)
Uncharacterized protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WBW2_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ46604.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_100_b1_sep16_scaffold_47_24
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27896..29161
DNA (1266bp) protein (422aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
aspartokinase Tax=Longispora albida RepID=UPI000375677E
aspartate kinase
PLM1_100_b1_sep16_scaffold_47_25
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29158..30222
DNA (1065bp) protein (355aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
Aspartate-semialdehyde dehydrogenase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A889_THECD
PLM1_100_b1_sep16_scaffold_47_26
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30277..31035)
DNA (759bp) protein (253aa)
glnQ3; Glutamine transport ATP-binding protein GlnQ (EC:3.6.3.-)
Amino-acid transporter subunit ATP-binding component of ABC superfamily Tax=Micromonospora lupini str. Lupac 08 RepID=I0L2C3_9ACTO
Amino-acid transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CCH17970.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
PLM1_100_b1_sep16_scaffold_47_27
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31040..31837)
DNA (798bp) protein (266aa)
Amino-acid ABC transporter permease protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0L2C2_9ACTO
Amino-acid ABC transporter permease protein {ECO:0000313|EMBL:CCH17969.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
ABC transporter permease
PLM1_100_b1_sep16_scaffold_47_28
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31901..32725)
DNA (825bp) protein (275aa)
Putative amino acid ABC transporter Tax=Micromonospora lupini str. Lupac 08 RepID=I0L2C1_9ACTO
Putative amino acid ABC transporter {ECO:0000313|EMBL:CCH17968.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
putative ABC transporter substrate-binding protein
PLM1_100_b1_sep16_scaffold_47_29
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32859..34703)
DNA (1845bp) protein (615aa)
Peptidase S9 prolyl oligopeptidase active site domain protein Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A8A0_THECD
peptidase S9 prolyl oligopeptidase active site domain-containing protein
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:ACZ00415.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
Displaying items 1-30 of 59 in total

View Taxonomy