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PLM1_100_b1_sep16_scaffold_494

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_494_1
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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1..141
DNA (141bp) protein (47aa)
Epoxide hydrolase domain protein Tax=Frankia sp. EUN1f RepID=D3CTN8_9ACTO
Epoxide hydrolase domain protein {ECO:0000313|EMBL:EFC85928.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
epoxide hydrolase
PLM1_100_b1_sep16_scaffold_494_2
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(184..2340)
DNA (2157bp) protein (719aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
Helicase Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2YSW7_9PSEU
Hypothetical protein
PLM1_100_b1_sep16_scaffold_494_3
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2693..3214
DNA (522bp) protein (174aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
Peptide deformylase Tax=Actinoplanes sp. N902-109 RepID=R4LG52_9ACTO
peptide deformylase
PLM1_100_b1_sep16_scaffold_494_4
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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3320..4555
DNA (1236bp) protein (412aa)
RocD protein {ECO:0000313|EMBL:KIR63521.1}; EC=2.6.1.13 {ECO:0000313|EMBL:KIR63521.1};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI00037E30FA
ornithine aminotransferase
PLM1_100_b1_sep16_scaffold_494_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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4613..5341
DNA (729bp) protein (243aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, ATP-binding component {ECO:0000313|EMBL:CBK43025.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBK43025.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
ABC-type transport system, ATP-binding component Tax=Candidatus Nitrospira defluvii RepID=D8PID8_9BACT
PLM1_100_b1_sep16_scaffold_494_6
R_Proteobacteria_53_8, Proteobacteria, Bacteria

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5338..6165
DNA (828bp) protein (276aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI00036DB133
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
PLM1_100_b1_sep16_scaffold_494_7
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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6298..8133
DNA (1836bp) protein (612aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI0003667F19
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH94878.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_100_b1_sep16_scaffold_494_8
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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8315..8974
DNA (660bp) protein (220aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y609_THEBD
HAD-superfamily hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 1 {ECO:0000313|EMBL:ADG89425.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM1_100_b1_sep16_scaffold_494_9
unknown

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comp(9054..9302)
DNA (249bp) protein (83aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_494_10
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(9511..10731)
DNA (1221bp) protein (407aa)
Uncharacterized protein Tax=Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) RepID=F2R6B8_STRVP
DNA-binding protein {ECO:0000313|EMBL:GAM50375.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_494_11
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11210..11860
DNA (651bp) protein (217aa)
Uncharacterized protein Tax=Micromonospora RepID=E8S305_MICSL
Membrane protein {ECO:0000313|EMBL:EWM65755.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_494_12
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

12142..13827
DNA (1686bp) protein (562aa)
Putative Polysaccharide deacetylase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RS07_BLASD
putative Polysaccharide deacetylase
Tax=BJP_08E140C01_Actinomycetales_70_11
PLM1_100_b1_sep16_scaffold_494_13
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13789..14730)
DNA (942bp) protein (314aa)
Zinc finger, SWIM domain protein Tax=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) RepID=A4X8I6_SALTO
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR60979.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
zinc finger SWIM domain-containing protein
PLM1_100_b1_sep16_scaffold_494_14
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14811..14984)
DNA (174bp) protein (58aa)
Uncharacterized protein {ECO:0000313|EMBL:ETK32251.1}; Flags: Fragment;; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
PLM1_100_b1_sep16_scaffold_494_15
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15338..15793)
DNA (456bp) protein (152aa)
Putative uncharacterized protein Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SLK7_ACTS5
Uncharacterized protein {ECO:0000313|EMBL:CCI51268.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
hypothetical protein
PLM1_100_b1_sep16_scaffold_494_16
unknown

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15918..16295
DNA (378bp) protein (126aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_494_17
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16292..16783
DNA (492bp) protein (164aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003652907
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ40716.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_100_b1_sep16_scaffold_494_18
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17264..17578
DNA (315bp) protein (105aa)
Uncharacterized protein Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YZD6_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD56455.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
PLM1_100_b1_sep16_scaffold_494_19
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17575..18795
DNA (1221bp) protein (407aa)
hypothetical protein Tax=Nocardiopsis valliformis RepID=UPI00034B8825
DNA-binding protein {ECO:0000313|EMBL:KIH96649.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
XRE family transcriptional regulator
PLM1_100_b1_sep16_scaffold_494_20
unknown

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19215..19613
DNA (399bp) protein (133aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_494_21
unknown

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19851..20108
DNA (258bp) protein (86aa)

This feature has no annotations

Displaying 21 items

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