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PLM1_100_b1_sep16_scaffold_327_51

Organism: PLM1_100_b1_sep16_Acidothermus_cellulolyticus_70_13

near complete RP 51 / 55 BSCG 50 / 51 MC: 2 ASCG 13 / 38 MC: 3
Location: comp(51630..52232)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFU8_THET1 similarity UNIREF
DB: UNIREF100
  • Identity: 28.2
  • Coverage: 170.0
  • Bit_score: 61
  • Evalue 7.10e-07
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseorubens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 33.2
  • Coverage: 208.0
  • Bit_score: 78
  • Evalue 7.90e-12
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 31.9
  • Coverage: 182.0
  • Bit_score: 72
  • Evalue 1.10e-10

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Taxonomy

Streptomyces griseorubens → Streptomyces → Streptomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 603
ATGCCGCTCTCCCAGAGTAAACCTGCAAGCGTCCGGACCTACGACGACATCCCGCCCGATGTAGCCTGCCTGCACAACGCTCAGGCCGGTGACCGAGAGGCATTCGCCGAGCTGTACCGCCGCAATGCCCGGGTCGTAAGACGCTACCTGTTCGTCCGGATGTCCCGGATGGGTTGGATACGCGACCTGGACTCTGTGGCCGATTTGGTCCAGGAGACATTCTGCGAGGCGTTCGCGGACCTGACGAACGCCCGAGATGACGTACGCGGCTGGCTGATCCTGCACGCCGCATGTGCTTTTAATCGGTATGACTGGGGGCGCCGGAGGTACTTGCGGGCAGCCTACCTTCAGTACCACCGAGCACGAACCTCCAGGCTGTTCGCTCAGGACGATGAGCCGGCAATACCTGACCGCTTGCGGCTGTGGGAGGCGTTACCTCGCCTGGGATCTGACCAACGCCGCTGTGTGCAACTGCGGTATCTGGAGGGACTTCCGGCTGAGCTCGTGGCCGGCCTAATGGGTCGCACGACCAACGCCGTCCGCCTACTCGAACGCCGCGCCCTGATACGACTTCGCGTCGTCCTCACCGCGCTAGACGCGTAA
PROTEIN sequence
Length: 201
MPLSQSKPASVRTYDDIPPDVACLHNAQAGDREAFAELYRRNARVVRRYLFVRMSRMGWIRDLDSVADLVQETFCEAFADLTNARDDVRGWLILHAACAFNRYDWGRRRYLRAAYLQYHRARTSRLFAQDDEPAIPDRLRLWEALPRLGSDQRRCVQLRYLEGLPAELVAGLMGRTTNAVRLLERRALIRLRVVLTALDA*