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PLM1_100_coex_sep16_scaffold_68

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_68_1
CSP1_5_NC10, NC10, Bacteria

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1..528
DNA (528bp) protein (176aa)
hypothetical protein bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM1_100_coex_sep16_scaffold_68_trna_1
unknown

Not on your lists

788..861
DNA (74bp)
transferRNA Arg
PLM1_100_coex_sep16_scaffold_68_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1012..2193
DNA (1182bp) protein (394aa)
Patatin Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T775_NIAKG
patatin
Patatin {ECO:0000313|EMBL:AEW00100.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM1_100_coex_sep16_scaffold_68_3
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2208..4217
DNA (2010bp) protein (670aa)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI0002D78874
Uncharacterized protein {ECO:0000313|EMBL:EON74873.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_68_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4378..5625
DNA (1248bp) protein (416aa)
Uncharacterized protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBN2_NITMU
Uncharacterized protein {ECO:0000313|EMBL:GAO35414.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_68_5
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5749..7158)
DNA (1410bp) protein (470aa)
Uncharacterized protein Tax=Thauera aminoaromatica S2 RepID=N6XRC8_9RHOO
hypothetical protein
Tax=BJP_IG2103_Rhodocyclales_63_50
PLM1_100_coex_sep16_scaffold_68_6
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7610..8224)
DNA (615bp) protein (205aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9G3T6_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN95796.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM1_100_coex_sep16_scaffold_68_7
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8370..9176)
DNA (807bp) protein (269aa)
Uncharacterized protein Tax=Ralstonia pickettii DTP0602 RepID=U3QJU6_RALPI
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
PLM1_100_coex_sep16_scaffold_68_8
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9154..10863)
DNA (1710bp) protein (570aa)
Uncharacterized protein Tax=Ralstonia pickettii DTP0602 RepID=U3QH69_RALPI
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
PLM1_100_coex_sep16_scaffold_68_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(11662..11901)
DNA (240bp) protein (80aa)
UBA/THIF-type NAD/FAD binding protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UBA/THIF-type NAD/FAD binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_68_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(11971..12891)
DNA (921bp) protein (307aa)
Molybdopterin biosynthesis protein MoeB bin=GWF2_Methylomirabilis_70_14 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin biosynthesis protein MoeB
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_68_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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13021..14082
DNA (1062bp) protein (354aa)
strD; glucose-1-phosphate thymidylyltransferase (dTDP-glucose synthase) (dTDP-glucose pyrophosphorylase) (Sugar-nucleotidylation enzyme) (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase (DTDP-glucose synthase) (DTDP-glucose pyrophosphorylase) (Sugar-nucleotidylation enzyme) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_68_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14082..14636
DNA (555bp) protein (185aa)
Putative dTDP-4-dehydrorhamnose 3,5-epimerase bin=GWC2_Methylomirabilis_70_16 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative dTDP-4-dehydrorhamnose 3,5-epimerase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_68_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14638..15636
DNA (999bp) protein (333aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase bin=GWC2_Methylomirabilis_70_16 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_68_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15642..16670
DNA (1029bp) protein (343aa)
PDZ/DHR/GLGF domain-containing protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PDZ/DHR/GLGF domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_100_coex_sep16_scaffold_68_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16685..18088
DNA (1404bp) protein (468aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_68_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

18115..19287
DNA (1173bp) protein (391aa)
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM1_100_coex_sep16_scaffold_68_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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19452..20687
DNA (1236bp) protein (412aa)
Fosmidomycin resistance protein bin=GWC2_Methylomirabilis_70_16 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
sugar phosphate permease
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_68_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

20674..21504
DNA (831bp) protein (277aa)
tRNA (Adenine-N(1)-)-methyltransferase bin=GWF2_Methylomirabilis_70_14 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (adenine-N(1)-)-methyltransferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_68_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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21508..22893
DNA (1386bp) protein (462aa)
Xanthine/uracil/vitamin C permease bin=GWC2_Methylomirabilis_70_16 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
xanthine/uracil/vitamin C permease
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_68_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

22977..24887
DNA (1911bp) protein (637aa)
Peptidylprolyl cis-trans isomerase, putative bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_68_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

24905..25471
DNA (567bp) protein (189aa)
Isochorismatase hydrolase bin=GWC2_Methylomirabilis_70_16 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
isochorismatase hydrolase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_68_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

25456..25857
DNA (402bp) protein (134aa)
Transcription elongation factor GreA bin=GWC2_Methylomirabilis_70_16 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
greA; transcription elongation factor GreA
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_68_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(26071..27204)
DNA (1134bp) protein (378aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_68_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27678..27827
DNA (150bp) protein (50aa)
ABC-type branched-chain amino acid transport systems, ATPase component
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_68_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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27824..28534
DNA (711bp) protein (237aa)
Fe(3+)-transporting ATPase (EC:3.6.3.30)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_68_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

28598..30028
DNA (1431bp) protein (477aa)
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase bin=GWF2_Methylomirabilis_70_14 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_68_27
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30286..30903
DNA (618bp) protein (206aa)
Isochorismatase hydrolase Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QS2_RHOFD
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ABD71881.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
PLM1_100_coex_sep16_scaffold_68_28
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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30947..31399
DNA (453bp) protein (151aa)
Acyl dehydratase bin=GWF2_Methylomirabilis_70_14 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-like protein dehydratase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_68_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

31415..32299
DNA (885bp) protein (295aa)
Citryl-CoA lyase (EC:4.1.3.34)
Citryl-CoA lyase bin=GWC2_Methylomirabilis_70_24 species=Mesorhizobium opportunistum genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
Displaying items 1-30 of 60 in total

View Taxonomy