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PLM1_100_coex_sep16_scaffold_132

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_132_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3..449
DNA (447bp) protein (149aa)
UvrABC system protein C bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
excinuclease ABC subunit C
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

485..733
DNA (249bp) protein (83aa)
id=4411491 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


822..3269
DNA (2448bp) protein (816aa)
Leucine--tRNA ligase bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
leuS; leucyl-tRNA synthetase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3262..3600
DNA (339bp) protein (113aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3570..4634
DNA (1065bp) protein (355aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III, delta subunit bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4631..5977
DNA (1347bp) protein (449aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Salpingoeca taxon_order=Choanoflagellida taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


comp(5961..6221)
DNA (261bp) protein (87aa)
30S ribosomal protein S20 bin=GWC2_Methylomirabilis_70_24 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
30S ribosomal protein S20
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_100_coex_sep16_scaffold_132_8
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

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6393..7724
DNA (1332bp) protein (444aa)
Integrase catalytic subunit bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
integrase catalytic subunit
Tax=RBG_16_Acidobacteria_64_8_curated
PLM1_100_coex_sep16_scaffold_132_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7937..9352
DNA (1416bp) protein (472aa)
Integral membrane protein MviN bin=GWF2_Methylomirabilis_70_14 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane protein MviN
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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9496..10482
DNA (987bp) protein (329aa)
Tyrosine recombinase XerD bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tyrosine recombinase XerD
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_132_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10484..12235
DNA (1752bp) protein (584aa)
Polynucleotide adenylyltransferase region bin=GWC2_Methylomirabilis_70_16 species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_132_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

12237..13847
DNA (1611bp) protein (537aa)
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2)
CTP synthase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_132_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13844..14692
DNA (849bp) protein (283aa)
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase; KDO-8-phosphate synthetase, KDOPS) (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase bin=GWC2_Methylomirabilis_70_24 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14692..15663
DNA (972bp) protein (324aa)
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13)
Arabinose 5-phosphate isomerase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

15660..16172
DNA (513bp) protein (171aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family bin=GWC2_Methylomirabilis_70_16 species=Coxiella burnetii genus=Coxiella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_132_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16234..16830
DNA (597bp) protein (199aa)
Hypothetical membrane protein bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_17
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

16827..17453
DNA (627bp) protein (209aa)
lipopolysaccharide transport periplasmic protein LptA; K09774 lipopolysaccharide export system protein LptA bin=bin7_NC10_sister species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
OstA-like protein
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM1_100_coex_sep16_scaffold_132_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17461..18183
DNA (723bp) protein (241aa)
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

18180..19652
DNA (1473bp) protein (491aa)
RNA polymerase sigma-54 factor bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNA polymerase sigma 54 subunit RpoN
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_132_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19664..19966
DNA (303bp) protein (101aa)
Protein DR_1082 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19963..20844
DNA (882bp) protein (294aa)
UPF0042 nucleotide-binding protein DAMO_1192 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_132_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

20837..22972
DNA (2136bp) protein (712aa)
alpha-amylase 1 (EC:3.2.1.1)
Alpha-amylase bin=GWC2_Methylomirabilis_70_24 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

23046..24197
DNA (1152bp) protein (384aa)
metK; methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_132_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

24322..27072
DNA (2751bp) protein (917aa)
UPF0182 protein DAMO_1249 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_132_25
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(27369..29690)
DNA (2322bp) protein (774aa)
Permease YjgP/YjgQ family protein bin=GWF2_Methylomirabilis_70_14 species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YjgP/YjgQ family permease
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

29715..30782
DNA (1068bp) protein (356aa)
id=3887643 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_132_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

30792..30899
DNA (108bp) protein (36aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 27 items

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