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PLM1_100_coex_sep16_scaffold_235

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_235_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3..272
DNA (270bp) protein (90aa)
Phosphoesterase PA-phosphatase related protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative integral membrane protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_235_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

272..1015
DNA (744bp) protein (248aa)
polyamine-transporting ATPase (EC:3.6.3.31)
ABC transporter related protein bin=GWF2_Methylomirabilis_70_14 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_235_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1020..1847
DNA (828bp) protein (276aa)
ABC-type transporter, integral membrane subunit bin=GWF2_Methylomirabilis_70_14 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_235_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1844..2359
DNA (516bp) protein (172aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Burkholderia rhizoxinica genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_235_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2370..3263
DNA (894bp) protein (298aa)
Cobalt-zinc-cadmium resistance protein CzcD bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
czcD; cation efflux system protein czcD
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_235_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3293..4453
DNA (1161bp) protein (387aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase protein Tax=Salinisphaera shabanensis E1L3A RepID=U2FTE3_9GAMM
metE1; hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_235_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4471..5169
DNA (699bp) protein (233aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_235_8
unknown

Not on your lists

comp(5300..5722)
DNA (423bp) protein (141aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_235_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5727..6890)
DNA (1164bp) protein (388aa)
fadE; acyl-CoA dehydrogenase fadE (EC:1.3.99.-)
Acyl-CoA dehydrogenase bin=GWF2_Methylomirabilis_70_14 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_235_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6960..7697
DNA (738bp) protein (246aa)
Iron (Metal) dependent repressor, DtxR family bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
iron dependent repressor
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_235_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7700..8455
DNA (756bp) protein (252aa)
Beta-lactamase family protein bin=GWC2_Methylomirabilis_70_24 species=Thiomicrospira crunogena genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_235_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8513..9703
DNA (1191bp) protein (397aa)
L-carnitine dehydratase/bile acid-inducible protein F bin=GWC2_Methylomirabilis_70_16 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
L-carnitine dehydratase/bile acid-inducible protein F
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_235_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9713..10918
DNA (1206bp) protein (402aa)
aminotransferase (EC:2.6.1.-)
Transcriptional regulator with HTH domain and aminotransferase domain bin=GWC2_Methylomirabilis_70_16 species=Thermanaerovibrio velox genus=Thermanaerovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_235_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11012..11227
DNA (216bp) protein (72aa)
sensor protein (EC:2.7.13.3)
Histidine kinase bin=GWC2_Methylomirabilis_70_24 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_235_15
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11272..12072
DNA (801bp) protein (267aa)
Methyltransferase type 11 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PUF1_KRIFD
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADB29469.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM1_100_coex_sep16_scaffold_235_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12069..12236
DNA (168bp) protein (56aa)
id=3227643 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_235_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(12245..12844)
DNA (600bp) protein (200aa)
ATP binding protein, putative Tax=Ricinus communis RepID=B9RLA3_RICCO
OmpA/MotB
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM1_100_coex_sep16_scaffold_235_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

12898..14556
DNA (1659bp) protein (553aa)
AMP-forming acyl-CoA synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
AMP-binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_100_coex_sep16_scaffold_235_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14527..14799)
DNA (273bp) protein (91aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_235_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(14796..15737)
DNA (942bp) protein (314aa)
Threonine dehydratase Tax=Singulisphaera acidiphila RepID=L0DI97_SINAD
threonine dehydratase
Threonine dehydratase {ECO:0000313|EMBL:AGA28538.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM1_100_coex_sep16_scaffold_235_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

15765..16130
DNA (366bp) protein (122aa)
Histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component sigma54 specific Fis family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_235_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16139..17101)
DNA (963bp) protein (321aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_235_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(17098..17499)
DNA (402bp) protein (134aa)
Thioesterase superfamily protein Tax=Rhodopseudomonas palustris RepID=B3Q8V8_RHOPT
thioesterase superfamily protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_100_coex_sep16_scaffold_235_24
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17561..18436
DNA (876bp) protein (292aa)
Putative transcriptional regulator Tax=Rhizobium sp. CF142 RepID=J1TDF3_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EJJ29846.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
putative transcriptional regulator
PLM1_100_coex_sep16_scaffold_235_25
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18433..19482
DNA (1050bp) protein (350aa)
Amidohydrolase 2 Tax=Delftia sp. (strain Cs1-4) RepID=F6ANB1_DELSC
Amidohydrolase {ECO:0000313|EMBL:ETX00656.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
amidohydrolase 2
PLM1_100_coex_sep16_scaffold_235_26
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

19486..20316
DNA (831bp) protein (277aa)
methyltransferase type 11 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
methyltransferase type 11
Tax=BJP_08E140C01_Coriobacteriales_62_12
PLM1_100_coex_sep16_scaffold_235_27
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20317..21201
DNA (885bp) protein (295aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX04959.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anoxybacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
PLM1_100_coex_sep16_scaffold_235_28
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21234..22418
DNA (1185bp) protein (395aa)
Putative Aminotransferase, class V Serine--glyoxylate aminotransferase {ECO:0000313|EMBL:CCD91795.1}; EC=2.6.1.45 {ECO:0000313|EMBL:CCD91795.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
Putative Aminotransferase, class V Serine--glyoxylate aminotransferase Tax=Bradyrhizobium sp. ORS 375 RepID=H0SC68_9BRAD
putative aminotransferase, class V
PLM1_100_coex_sep16_scaffold_235_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22437..23183)
DNA (747bp) protein (249aa)
SoxAX cytochrome complex subunit A Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GST1_9BRAD
cytochrome C
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM1_100_coex_sep16_scaffold_235_30
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23209..23529)
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D5M3_BRAJP
sulfur oxidation protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
Displaying items 1-30 of 35 in total

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