ggKbase home page

PLM1_100_coex_sep16_scaffold_326

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_326_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..2118)
DNA (2118bp) protein (706aa)
fatty-acid--CoA ligase (EC:6.2.1.3)
Uncharacterized protein Tax=Afipia clevelandensis ATCC 49720 RepID=K8P4U8_9BRAD
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM1_100_coex_sep16_scaffold_326_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2109..2882)
DNA (774bp) protein (258aa)
Uncharacterized protein Tax=Afipia broomeae ATCC 49717 RepID=K8P4S2_9BRAD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETR74748.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
ABC transporter ATP-binding protein
PLM1_100_coex_sep16_scaffold_326_3
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2886..3437)
DNA (552bp) protein (184aa)
ABC-type branched-chain amino acid transport system, ATPase component Tax=Bradyrhizobium sp. WSM1253 RepID=I2QM39_9BRAD
ABC transporter ATP-binding protein
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EIG60845.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
PLM1_100_coex_sep16_scaffold_326_4
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3451..4623)
DNA (1173bp) protein (391aa)
Putative branched-chain amino acid ABC transporter, permease protein Tax=Variovorax paradoxus B4 RepID=T1XJ87_VARPD
putative branched-chain amino acid ABC transporter, permease protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
PLM1_100_coex_sep16_scaffold_326_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4631..5611)
DNA (981bp) protein (327aa)
Inner-membrane translocator Tax=Rhodopseudomonas palustris RepID=B3QJ81_RHOPT
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACE99962.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
PLM1_100_coex_sep16_scaffold_326_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5583..7625)
DNA (2043bp) protein (681aa)
Putative dimethyl sulfoxide reductase bin=GWF2_Methylomirabilis_70_14 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
anaerobic dehydrogenase, typically selenocysteine-containing
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_326_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7660..8106
DNA (447bp) protein (149aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_326_8
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8113..9189)
DNA (1077bp) protein (359aa)
mandelate racemase (EC:5.1.2.2)
Blr7625 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89D20_BRADU
Mandelate racemase {ECO:0000313|EMBL:ETX00107.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM1_100_coex_sep16_scaffold_326_9
Desulfotignum phosphitoxidans, Desulfotignum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9208..9639)
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G6W5_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EMS80371.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfotignum.;" source="Desulfotignum phosphitoxidans DSM 13687.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_326_10
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9836..10573
DNA (738bp) protein (246aa)
Putative uncharacterized protein Tax=Sphingobium sp. SYK-6 RepID=G2IJ66_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJC17887.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
PLM1_100_coex_sep16_scaffold_326_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10785..11168)
DNA (384bp) protein (128aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_326_12
unknown

Not on your lists

11307..11516
DNA (210bp) protein (70aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_326_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12283..13773
DNA (1491bp) protein (497aa)
Amine oxidase Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QGY6_CATAD
amine oxidase
Amine oxidase {ECO:0000313|EMBL:AHG88416.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM1_100_coex_sep16_scaffold_326_14
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

14129..15673
DNA (1545bp) protein (515aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM1_100_coex_sep16_scaffold_326_15
unknown

Not on your lists

comp(16485..16715)
DNA (231bp) protein (77aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_326_16
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

16876..17100
DNA (225bp) protein (75aa)
Integrase catalytic subunit Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GMJ5_THISH
integrase catalytic subunit
Tax=RBG_13_Actinobacteria_63_9_curated
PLM1_100_coex_sep16_scaffold_326_17

Not on your lists

17581..18543
DNA (963bp) protein (321aa)
Uncharacterized protein Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3T6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKK74490.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase, ISL3 family
PLM1_100_coex_sep16_scaffold_326_18
unknown

Not on your lists

comp(18949..19281)
DNA (333bp) protein (111aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_326_19
Photobacterium sp. M37, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19471..19788)
DNA (318bp) protein (106aa)
Lipase Tax=Photobacterium sp. M37 RepID=Q5DRN8_9GAMM
Lipase {ECO:0000313|EMBL:AAS78630.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium sp. M37.;"
PLM1_100_coex_sep16_scaffold_326_20
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19838..21412)
DNA (1575bp) protein (525aa)
4-hydroxyphenylacetate-3-hydroxylase Tax=Streptomyces RepID=L7PIJ6_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ETW95770.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
aromatic compound hydroxylase
PLM1_100_coex_sep16_scaffold_326_21
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21543..22418)
DNA (876bp) protein (292aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit (EC:4.2.3.1)
Threonine synthase Tax=Lutibaculum baratangense AMV1 RepID=V4QVL4_9RHIZ
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM1_100_coex_sep16_scaffold_326_22
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(22432..23673)
DNA (1242bp) protein (414aa)
Acetylornithine deacetylase Tax=Nocardia brasiliensis ATCC 700358 RepID=K0F900_9NOCA
acetylornithine deacetylase
Tax=RBG_16_Bathyarchaeota_57_9_curated
PLM1_100_coex_sep16_scaffold_326_23
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23771..25015
DNA (1245bp) protein (415aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI00030E8726
Allantoate amidohydrolase {ECO:0000313|EMBL:EKF41854.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
amidase, hydantoinase/carbamoylase family
PLM1_100_coex_sep16_scaffold_326_24
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25101..26240
DNA (1140bp) protein (380aa)
Major facilitator superfamily MFS_1 Tax=Geobacter sp. (strain M18) RepID=E8WQZ4_GEOS8
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADW15231.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM1_100_coex_sep16_scaffold_326_25
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26355..27572
DNA (1218bp) protein (406aa)
Extracellular ligand-binding receptor bin=GWC2_Syntrophus__56_31 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
substrate-binding periplasmic protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM1_100_coex_sep16_scaffold_326_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27584..28234
DNA (651bp) protein (217aa)
cupin bin=GWA2_Methylomirabilis_73_35 species=Sphingomonas elodea genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_326_27
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28137..29327)
DNA (1191bp) protein (397aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2K1X5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE76864.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_326_28
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29324..30490)
DNA (1167bp) protein (389aa)
Uncharacterized protein (Fragment) Tax=uncultured bacterium RepID=M5AJ85_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETX08517.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
beta-lactamase
PLM1_100_coex_sep16_scaffold_326_29
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(30687..32099)
DNA (1413bp) protein (471aa)
Amidase Tax=Nitrolancetus hollandicus Lb RepID=I4EDC8_9CHLR
Amidase {ECO:0000313|EMBL:CCF82690.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
amidase
PLM1_100_coex_sep16_scaffold_326_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32121..33764)
DNA (1644bp) protein (548aa)
hypothetical protein; K06890 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
thiamine pyrophosphate-dependent enzyme, putative carboligase or decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Displaying items 1-30 of 55 in total

View Taxonomy