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PLM1_100_coex_sep16_scaffold_979

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_979_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(224..736)
DNA (513bp) protein (171aa)
Ferripyochelin binding protein (Fbp) bin=GWC2_Methylomirabilis_70_16 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ferripyochelin binding protein (fbp)
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_979_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(733..1515)
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase/isomerase bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Enoyl-CoA hydratase/isomerase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_979_3
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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1610..2224
DNA (615bp) protein (205aa)
hypothetical protein Tax=Nocardiopsis baichengensis RepID=UPI00036942F5
HAD-superfamily hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ACO32348.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
PLM1_100_coex_sep16_scaffold_979_4
unknown

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2417..2902
DNA (486bp) protein (162aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_979_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2918..3472)
DNA (555bp) protein (185aa)
thiamine pyrophosphate TPP-binding domain-containing protein
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein 11 bin=GWC2_Methylomirabilis_70_16 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_979_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(3469..3963)
DNA (495bp) protein (165aa)
Putative phosphonopyruvate decarboxylase bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative phosphonopyruvate decarboxylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_979_7
unknown

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comp(3960..4139)
DNA (180bp) protein (60aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_979_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(4899..5675)
DNA (777bp) protein (259aa)
Binding--dependent transport system inner membrane component family protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_979_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5675..6469)
DNA (795bp) protein (265aa)
ABC-type spermidine/putrescine transport system, permease component I bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. YR681 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_979_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(6483..7517)
DNA (1035bp) protein (345aa)
Extracellular solute-binding protein family 1 bin=GWF2_Methylomirabilis_70_14 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_979_11
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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comp(7527..8015)
DNA (489bp) protein (163aa)
Aldehyde oxidase small subunit Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KYN1_THERP
aldehyde oxidase small subunit
Aldehyde oxidase small subunit {ECO:0000313|EMBL:ACM04714.1}; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
PLM1_100_coex_sep16_scaffold_979_12
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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comp(8012..8881)
DNA (870bp) protein (290aa)
carbon monoxide dehydrogenase (EC:1.2.99.2); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] bin=bin9_gal15 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
carbon monoxide dehydrogenase medium chain (COdehydrogenase subunit M) (CO-DH M) (EC:1.2.99.2)
Tax=CSP1_3_Armatimonadetes
PLM1_100_coex_sep16_scaffold_979_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8878..11238)
DNA (2361bp) protein (787aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) bin=bin7_NC10_sister species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_979_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11369..12064)
DNA (696bp) protein (232aa)
High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding) Tax=Azospirillum brasilense Sp245 RepID=G8AYT4_AZOBR
livF1; high-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding)
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_979_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12051..12821)
DNA (771bp) protein (257aa)
Branched-chain amino acid transport ATP-binding protein LivG Tax=Rhodovulum sp. PH10 RepID=J6J2P3_9RHOB
livG1; High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_979_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12818..13762)
DNA (945bp) protein (315aa)
Inner-membrane translocator bin=GWA2_Methylomirabilis_73_35 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_979_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13759..14631)
DNA (873bp) protein (291aa)
ABC transporter permease protein Tax=Bradyrhizobium sp. STM 3843 RepID=H0TNH8_9BRAD
inner-membrane translocator
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_979_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14654..15823)
DNA (1170bp) protein (390aa)
Branched-chain amino acid ABC transporter, amino acid-binding protein bin=GWA2_Methylomirabilis_73_35 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter substrate-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_979_19
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16054..16755
DNA (702bp) protein (234aa)
Transcriptional regulator, GntR family Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AFM3_CARHZ
Uncharacterized protein {ECO:0000313|EMBL:KEA59908.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
GntR family transcriptional regulator
PLM1_100_coex_sep16_scaffold_979_20
Pseudomonas oryzihabitans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16760..17764
DNA (1005bp) protein (335aa)
hypothetical protein Tax=Pseudomonas sp. 313 RepID=UPI0002D479D4
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:KIZ48663.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas oryzihabitans.;"
2OG-Fe(II) oxygenase
PLM1_100_coex_sep16_scaffold_979_21
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

17769..18827
DNA (1059bp) protein (353aa)
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A Tax=Candidatus Caldiarchaeum subterraneum RepID=Q4LEC7_9ARCH
Tax=RBG_16_Zixibacteria_53_22_curated
PLM1_100_coex_sep16_scaffold_979_22
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18824..19120
DNA (297bp) protein (99aa)
gctA; glutaconate CoA transferase subunit A (EC:2.8.3.12)
Glutaconate CoA-transferase, subunit A Tax=Saccharopolyspora erythraea RepID=A4FJB8_SACEN
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Displaying 22 items

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