ggKbase home page

PLM1_100_coex_sep16_scaffold_1081

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_1081_1
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..219
DNA (219bp) protein (73aa)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI0003604CE6
hypothetical protein
Blr7719 protein {ECO:0000313|EMBL:BAC52984.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
PLM1_100_coex_sep16_scaffold_1081_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

269..706
DNA (438bp) protein (146aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C5114
FAD dependent oxidoreductase
Uncharacterized protein {ECO:0000313|EMBL:CBE67529.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM1_100_coex_sep16_scaffold_1081_3
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(565..1662)
DNA (1098bp) protein (366aa)
quinone oxidoreductase Tax=Fodinicurvata sediminis RepID=UPI0003B47795
Quinone oxidoreductase {ECO:0000313|EMBL:ESX83004.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
alcohol dehydrogenase zinc-binding domain-containing protein
PLM1_100_coex_sep16_scaffold_1081_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1865..2302)
DNA (438bp) protein (146aa)
polyketide cyclase Tax=Fodinicurvata sediminis RepID=UPI0003B510D8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ68921.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
PLM1_100_coex_sep16_scaffold_1081_5
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2404..4116)
DNA (1713bp) protein (571aa)
hypothetical protein Tax=Fodinicurvata sediminis RepID=UPI0003B39D3D
Conserved hypothetical protein,putative inner membrane protein yqiK
Uncharacterized protein {ECO:0000313|EMBL:CCQ74389.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
PLM1_100_coex_sep16_scaffold_1081_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4145..4813)
DNA (669bp) protein (223aa)
Uncharacterized protein Tax=Azospirillum brasilense Sp245 RepID=G8AJD6_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIB16156.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM1_100_coex_sep16_scaffold_1081_7
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4952..7246)
DNA (2295bp) protein (765aa)
ABC transporter permease Tax=Fodinicurvata sediminis RepID=UPI0003B44B82
LivF_4 protein {ECO:0000313|EMBL:KIT16233.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_1081_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7246..8010)
DNA (765bp) protein (255aa)
Putative ABC transporter, ATP-binding protein Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YX83_BRASO
ABC transporter {ECO:0000313|EMBL:GAN76806.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ABC transporter ATP-binding protein
PLM1_100_coex_sep16_scaffold_1081_9
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8007..8801)
DNA (795bp) protein (265aa)
UPI0003CF00C5 related cluster Tax=unknown RepID=UPI0003CF00C5
Extracellular ligand-binding receptor {ECO:0000313|EMBL:CDX29490.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Extracellular ligand-binding receptor
PLM1_100_coex_sep16_scaffold_1081_10
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8744..9124)
DNA (381bp) protein (127aa)
ABC transporter substrate-binding protein Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FT91_9RHIZ
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AIB16180.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM1_100_coex_sep16_scaffold_1081_11
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9121..10284)
DNA (1164bp) protein (388aa)
ABC transporter ATP-binding protein Tax=Fodinicurvata sediminis RepID=UPI0003B32B2A
ABC transporter {ECO:0000313|EMBL:GAN76548.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
inner-membrane translocator
PLM1_100_coex_sep16_scaffold_1081_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10281..11225)
DNA (945bp) protein (315aa)
ABC transporter ATP-binding protein Tax=Fodinicurvata sediminis RepID=UPI0003B62221
Inner-membrane translocator {ECO:0000313|EMBL:CDX45499.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator
PLM1_100_coex_sep16_scaffold_1081_13
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11233..12522)
DNA (1290bp) protein (430aa)
Amidohydrolase Tax=Burkholderia graminis C4D1M RepID=B1G3A0_9BURK
Amidohydrolase {ECO:0000313|EMBL:EDT09445.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_1081_14
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12535..13320)
DNA (786bp) protein (262aa)
Hydrolase or acyltransferase (Alpha/beta hydrolase superfamily) Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LAH1_RALME
Alpha/beta hydrolase fold family protein {ECO:0000313|EMBL:KGC20323.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia mallei (Pseudomonas mallei).;"
alpha/beta hydrolase fold
PLM1_100_coex_sep16_scaffold_1081_15
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13340..14626)
DNA (1287bp) protein (429aa)
cytosine deaminase Tax=Fodinicurvata sediminis RepID=UPI0003B33AB5
Amidohydrolase {ECO:0000313|EMBL:EDT09445.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_1081_16
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14787..15452
DNA (666bp) protein (222aa)
Transcriptional regulator, TetR family Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HWG7_RUBGI
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:BAL97354.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
PLM1_100_coex_sep16_scaffold_1081_17
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

15531..15923
DNA (393bp) protein (131aa)
Transcriptional regulator, GntR family Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RS02_9PROT
gntR; GntR domain-containing protein
Tax=RBG_16_NC10_65_8_curated
Displaying 17 items

View Taxonomy