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PLM1_100_coex_sep16_scaffold_718

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_718_1
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1195
DNA (1194bp) protein (398aa)
Putative uncharacterized protein Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JPQ6_BURP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA49941.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
PLM1_100_coex_sep16_scaffold_718_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1177..2292
DNA (1116bp) protein (372aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
D-alanine--D-alanine ligase (EC:6.3.2.4)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_718_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2294..3460
DNA (1167bp) protein (389aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_718_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(3490..4191)
DNA (702bp) protein (234aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_718_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4208..5179
DNA (972bp) protein (324aa)
ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein bin=bin7_NC10_sister species=Burkholderia sp. WSM4176 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
NMT1-like family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_718_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(5157..5756)
DNA (600bp) protein (200aa)
MAF protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
maf protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_718_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(5770..6690)
DNA (921bp) protein (307aa)
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_718_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(6687..7082)
DNA (396bp) protein (132aa)
S-adenosylmethionine decarboxylase proenzyme bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
S-adenosylmethionine decarboxylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_718_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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7488..7967
DNA (480bp) protein (160aa)
pyruvoyl-dependent arginine decarboxylase (EC:4.1.1.19)
Pyruvoyl-dependent arginine decarboxylase bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_718_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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7996..8862
DNA (867bp) protein (289aa)
agmatinase (EC:3.5.3.11); K01480 agmatinase [EC:3.5.3.11] bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
agmatinase (EC:3.5.3.11)
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_718_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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8859..9647
DNA (789bp) protein (263aa)
Methyltransferase type 11 bin=GWA2_Methylomirabilis_73_35 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase type 11
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_718_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9959..10351
DNA (393bp) protein (131aa)
Putative SAM-dependent methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_718_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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10359..10973
DNA (615bp) protein (205aa)
Putative SAM-dependent methyltransferase bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
SAM-dependent methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_718_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(10977..12005)
DNA (1029bp) protein (343aa)
putative Zn-dependent hydrolase of beta-lactamase fold protein bin=bin7_NC10_sister species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative Zn-dependent hydrolase of beta-lactamase fold protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_718_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12050..13306)
DNA (1257bp) protein (419aa)
Multi-sensor hybrid histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor hybrid histidine kinase
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_718_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(13303..14319)
DNA (1017bp) protein (339aa)
Two-component response regulator bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_718_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(14363..16999)
DNA (2637bp) protein (879aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
alanyl-tRNA synthetase (EC:6.1.1.7)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_718_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(16996..17331)
DNA (336bp) protein (112aa)
Regulatory protein RecX bin=GWC2_Methylomirabilis_70_16 species=Streptomyces clavuligerus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
regulatory protein RecX
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_718_19
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(17494..18240)
DNA (747bp) protein (249aa)
Protein RecA bin=GWF2_Methylomirabilis_70_14 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recA; multifunctional SOS repair factor
Tax=CSP1_6_Rokubacteria
Displaying 19 items

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