ggKbase home page

PLM1_100_coex_sep16_scaffold_2363

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_2363_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..428)
DNA (426bp) protein (142aa)
Binding-protein-dependent transport systems inner membrane component Tax=Rhodobacter RepID=A3PSA1_RHOS1
ABC di/oligopeptide transporter, inner membrane subunit
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_2363_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(476..1420)
DNA (945bp) protein (315aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component bin=GWF2_Methylomirabilis_70_14 species=Brevibacillus sp. BC25 genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_2363_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1467..3035)
DNA (1569bp) protein (523aa)
ABC transporter substrate binding protein (Dipeptide) bin=GWF2_Methylomirabilis_70_14 species=Agrobacterium vitis genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein family 5
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_2363_4
Thermococcus gammatolerans, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

3706..4068
DNA (363bp) protein (121aa)
udp-2; Uridine phosphorylase (udp) (EC:2.4.2.3)
Uridine phosphorylase {ECO:0000256|RuleBase:RU361131}; EC=2.4.2.3 {ECO:0000256|RuleBase:RU361131};; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3).;"
Uridine phosphorylase (Udp) Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=C5A7L5_THEGJ
PLM1_100_coex_sep16_scaffold_2363_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4065..6428
DNA (2364bp) protein (788aa)
invasion protein Tax=Streptomyces sp. FxanaD5 RepID=UPI000370DED9
Invasion protein {ECO:0000313|EMBL:KGM31874.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
FAD dependent oxidoreductase
PLM1_100_coex_sep16_scaffold_2363_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

6478..7218
DNA (741bp) protein (247aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002E93E8C
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM1_100_coex_sep16_scaffold_2363_7
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7218..8018
DNA (801bp) protein (267aa)
ABC transporter permease Tax=Labrenzia RepID=U7G045_9RHOB
ABC transporter permease {ECO:0000313|EMBL:ERP90852.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
binding-protein-dependent transport system inner membrane protein
PLM1_100_coex_sep16_scaffold_2363_8
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8015..9313
DNA (1299bp) protein (433aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000255|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000255|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000255|HAMAP-Rule:MF_01281};; EC=3.5.4.31 {ECO:0000255|HAMAP-Rule:MF_01281};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI).;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=MTAD_PELTS
SsnA; cytosine deaminase and related metal-dependent hydrolases
PLM1_100_coex_sep16_scaffold_2363_9
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9300..10016
DNA (717bp) protein (239aa)
add; adenosine deaminase (EC:3.5.4.4)
Adenosine deaminase {ECO:0000313|EMBL:BAH39397.1}; EC=3.5.4.4 {ECO:0000313|EMBL:BAH39397.1};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Adenosine deaminase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ1_GEMAT
PLM1_100_coex_sep16_scaffold_2363_10
unknown

Not on your lists

10531..10809
DNA (279bp) protein (93aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_2363_11
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(10862..11140)
DNA (279bp) protein (93aa)
5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU361270}; Short=HIU hydrolase {ECO:0000256|RuleBase:RU361270};; Short=HIUHase {ECO:0000256|RuleBase:RU361270};; EC=3.5.2.17 {ECO:0000256|RuleBase:RU361270};; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
5-hydroxyisourate hydrolase Tax=Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) RepID=D3PRR9_MEIRD
hydroxyisourate hydrolase
PLM1_100_coex_sep16_scaffold_2363_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11228..11551)
DNA (324bp) protein (108aa)
Transthyretin family protein Tax=Rhodovulum sp. PH10 RepID=J6J2D2_9RHOB
Transthyretin family protein {ECO:0000313|EMBL:EJW10985.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
OHCU decarboxylase
PLM1_100_coex_sep16_scaffold_2363_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11681..12889)
DNA (1209bp) protein (403aa)
Predicted membrane protein Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SN04_HAHCH bin=16ft_combo_ws3_JS1 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
protein of unknown function DUF989
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM1_100_coex_sep16_scaffold_2363_14
Halomonas sp. BC04, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12902..13660)
DNA (759bp) protein (253aa)
ABC transporter permease {ECO:0000313|EMBL:EWH01813.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. BC04.;"
ABC transporter permease; K02050 NitT/TauT family transport system permease protein bin=bin9_gal15 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
Nitrate/sulfonate/bicarbonate ABC transporter, permease protein
PLM1_100_coex_sep16_scaffold_2363_15
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13657..14418)
DNA (762bp) protein (254aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI000379609B
ABC transporter
ABC transporter {ECO:0000313|EMBL:BAF86023.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
PLM1_100_coex_sep16_scaffold_2363_16
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14451..15779)
DNA (1329bp) protein (443aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein {ECO:0000313|EMBL:ADU51591.1}; EC=1.17.1.4 {ECO:0000313|EMBL:ADU51591.1};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
Xanthine dehydrogenase, molybdenum binding subunit apoprotein Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGD9_THEM7
Displaying 16 items

View Taxonomy