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PLM1_100_coex_sep16_scaffold_2750

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_2750_1
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..402
DNA (402bp) protein (134aa)
hypothetical protein Tax=Methylomonas sp. MK1 RepID=UPI000377EB52
CTP synthase {ECO:0000313|EMBL:KHD32510.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_2750_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(399..881)
DNA (483bp) protein (161aa)
50S ribosomal protein L17 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L17
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_2750_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1080..2060)
DNA (981bp) protein (327aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(2070..2693)
DNA (624bp) protein (208aa)
30S ribosomal protein S4 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsD; 30S ribosomal protein S4
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(2642..3001)
DNA (360bp) protein (120aa)
30S ribosomal protein S11 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsK; 30S ribosomal protein S11
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(3005..3424)
DNA (420bp) protein (140aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S13
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_2750_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3437..3550)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 bin=GWA2_Methylomirabilis_73_35 species=Propionibacterium freudenreichii genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3564..3782)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infA; translation initiation factor IF-1
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_2750_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3807..4568)
DNA (762bp) protein (254aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methionine aminopeptidase, type I
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4565..5215)
DNA (651bp) protein (217aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate kinase (EC:2.7.4.3)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(5220..6551)
DNA (1332bp) protein (444aa)
Protein translocase subunit SecY bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(6548..6859)
DNA (312bp) protein (104aa)
50S ribosomal protein L15 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplO; 50S ribosomal protein L15
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(7085..7621)
DNA (537bp) protein (179aa)
30S ribosomal protein S5 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsE; 30S ribosomal protein S5
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(7830..8195)
DNA (366bp) protein (122aa)
50S ribosomal protein L18 bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplR; 50S ribosomal protein L18
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_2750_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(8192..8734)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 bin=GWA2_Methylomirabilis_73_35 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L6
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_2750_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(8746..9141)
DNA (396bp) protein (132aa)
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rpsH; 30S ribosomal protein S8
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2750_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(9145..9330)
DNA (186bp) protein (62aa)
50S ribosomal protein L5 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsZ; 30S ribosomal protein S14
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_2750_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(9334..9669)
DNA (336bp) protein (112aa)
50S ribosomal protein L5 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplE; 50S ribosomal protein L5
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Displaying 18 items

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