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PLM1_100_coex_sep16_scaffold_3875

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_3875_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(3..299)
DNA (297bp) protein (99aa)
Peptide ABC transporter substrate-binding protein bin=GWC2_Methylomirabilis_70_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide ABC transporter substrate-binding protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_3875_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(327..1361)
DNA (1035bp) protein (345aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_3875_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1358..2464)
DNA (1107bp) protein (369aa)
Type III effector Hrp-dependent outers bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Hrp-dependent type III effector protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_3875_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2506..3168
DNA (663bp) protein (221aa)
Putative Thiol-disulfide oxidoreductase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
resA; thiol-disulfide oxidoreductase resA
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_3875_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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3185..4738
DNA (1554bp) protein (518aa)
Homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39] bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ccdA; cytochrome c biogenesis protein CcdA
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_3875_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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4749..4985
DNA (237bp) protein (79aa)
Putative permease of the major facilitator superfamily Tax=Bradyrhizobium sp. STM 3843 RepID=H0TZV3_9BRAD
MFS transporter
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_3875_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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5018..6166
DNA (1149bp) protein (383aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_3875_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6272..6475
DNA (204bp) protein (68aa)
Prokaryotic ubiquitin-like protein Pup bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_3875_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6479..6694
DNA (216bp) protein (72aa)
FmdB family regulatory protein bin=bin7_NC10_sister species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
FmdB family regulatory protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_3875_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6802..6936
DNA (135bp) protein (45aa)
Transcriptional regulator, LysR family bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LysR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 10 items

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