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PLM1_100_coex_sep16_Rokubacteria_71_11

PLM1_100cm_coex_sep2016_Rokubacteria_71_11
In projects: PLM1_100cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 351-400 of 679 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_100_coex_sep16_scaffold_2370
Phylum: Rokubacteria (89.47%)
19 18826 bp 71.67 10.48 99.80
PLM1_100_coex_sep16_scaffold_991
Phylum: Rokubacteria (66.67%)
9 8767 bp 70.50 10.47 95.16
PLM1_100_coex_sep16_scaffold_5223
Species: R_Rokubacteria_73_56 (75%)
4 3167 bp 73.35 10.47 91.51
PLM1_100_coex_sep16_scaffold_2853
Phylum: Rokubacteria (78.57%)
14 11127 bp 71.33 10.46 94.23
PLM1_100_coex_sep16_scaffold_4462
Species: R_Rokubacteria_73_56 (50%)
4 3441 bp 68.93 10.46 97.12
PLM1_100_coex_sep16_scaffold_1354
Phylum: Rokubacteria (80%)
10 8214 bp 70.95 10.46 89.08
PLM1_100_coex_sep16_scaffold_21057
Domain: Bacteria (57.14%)
7 4086 bp 72.08 10.46 78.41
PLM1_100_coex_sep16_scaffold_2565
Phylum: Rokubacteria (60%)
5 4609 bp 73.03 10.45 96.01
PLM1_100_coex_sep16_scaffold_3284
Phylum: Proteobacteria (50%)
8 4034 bp 70.60 10.45 94.82
PLM1_100_coex_sep16_scaffold_4362
Phylum: Rokubacteria (66.67%)
3 3488 bp 72.71 10.45 91.34
PLM1_100_coex_sep16_scaffold_2581
Phylum: Rokubacteria (75%)
4 4598 bp 71.42 10.44 98.19
PLM1_100_coex_sep16_scaffold_1848
Phylum: Rokubacteria (75%)
4 5491 bp 69.19 10.44 99.60
PLM1_100_coex_sep16_scaffold_10180
Species: Dyella jiangningensis (50%)
4 3088 bp 71.79 10.44 98.12
PLM1_100_coex_sep16_scaffold_2249
Phylum: Rokubacteria (80%)
10 8172 bp 73.16 10.43 89.28
PLM1_100_coex_sep16_scaffold_5926
Phylum: Proteobacteria (60%)
5 2981 bp 70.31 10.42 94.10
PLM1_100_coex_sep16_scaffold_5993
Phylum: Actinobacteria (66.67%)
3 2966 bp 73.84 10.42 93.26
PLM1_100_coex_sep16_scaffold_3346
Phylum: Rokubacteria (50%)
8 3993 bp 69.67 10.41 92.26
PLM1_100_coex_sep16_scaffold_3016
Phylum: Rokubacteria (50%)
4 5625 bp 73.16 10.40 97.33
PLM1_100_coex_sep16_scaffold_3296
Species: R_Rokubacteria_73_56 (60%)
5 5812 bp 72.26 10.40 97.51
PLM1_100_coex_sep16_scaffold_6806
Species: R_Rokubacteria_73_56 (66.67%)
3 2784 bp 73.31 10.40 91.38
PLM1_100_coex_sep16_scaffold_1695
Species: R_Rokubacteria_73_56 (60%)
10 8166 bp 72.63 10.40 92.32
PLM1_100_coex_sep16_scaffold_3861
Domain: Bacteria (80%)
5 3696 bp 72.62 10.39 98.05
PLM1_100_coex_sep16_scaffold_6591
Phylum: Rokubacteria (50%)
4 2831 bp 70.36 10.39 86.15
PLM1_100_coex_sep16_scaffold_3759
Species: R_Rokubacteria_73_56 (66.67%)
3 5983 bp 70.27 10.38 90.56
PLM1_100_coex_sep16_scaffold_666
Domain: Bacteria (100%)
11 10366 bp 68.82 10.38 97.73
PLM1_100_coex_sep16_scaffold_1040
Phylum: Rokubacteria (50%)
8 7506 bp 72.66 10.37 95.24
PLM1_100_coex_sep16_scaffold_3737
Domain: Bacteria (60%)
5 3763 bp 69.81 10.36 94.95
PLM1_100_coex_sep16_scaffold_4656
Species: GWC2_Syntrophus_56_31_curated (50%)
2 3360 bp 66.82 10.36 93.48
PLM1_100_coex_sep16_scaffold_5956
Phylum: Rokubacteria (50%)
6 5358 bp 69.34 10.36 71.67
PLM1_100_coex_sep16_scaffold_1669
Phylum: Proteobacteria (50%)
8 5823 bp 71.41 10.36 99.85
PLM1_100_coex_sep16_scaffold_1950
Phylum: Rokubacteria (55.56%)
9 7109 bp 70.50 10.36 92.33
PLM1_100_coex_sep16_scaffold_2677
Phylum: Proteobacteria (50%)
6 4506 bp 68.20 10.35 82.02
PLM1_100_coex_sep16_scaffold_5305
Species: GWC2_Rokubacteria_70_16_curated (50%)
4 3148 bp 70.93 10.34 101.30
PLM1_100_coex_sep16_scaffold_5411
Phylum: Rokubacteria (60%)
5 5816 bp 70.86 10.34 94.45
PLM1_100_coex_sep16_scaffold_3965
Species: R_Rokubacteria_73_56 (75%)
4 3654 bp 69.87 10.34 97.45
PLM1_100_coex_sep16_scaffold_3019
Species: GWA2_Rokubacteria_70_23_curated (60%)
5 4226 bp 70.71 10.33 97.54
PLM1_100_coex_sep16_scaffold_7453
Domain: Bacteria (100%)
3 2658 bp 70.84 10.33 94.58
PLM1_100_coex_sep16_scaffold_5280
Class: Deltaproteobacteria (50%)
4 3153 bp 69.36 10.32 88.96
PLM1_100_coex_sep16_scaffold_3509
Species: CSP1_6_Rokubacteria (75%)
4 3897 bp 69.64 10.32 96.23
PLM1_100_coex_sep16_scaffold_3165
Phylum: Rokubacteria (80%)
10 7866 bp 70.65 10.32 90.24
PLM1_100_coex_sep16_scaffold_2284
Phylum: Rokubacteria (87.5%)
8 6369 bp 70.40 10.32 97.03
PLM1_100_coex_sep16_scaffold_4155
Species: R_Rokubacteria_73_56 (57.14%)
7 4462 bp 68.85 10.29 86.46
PLM1_100_coex_sep16_scaffold_2608
Domain: Bacteria (80%)
5 5756 bp 71.47 10.29 96.53
PLM1_100_coex_sep16_scaffold_5849
Species: GWA2_RIF03_38_11_curated (50%)
2 3004 bp 71.84 10.29 97.17
PLM1_100_coex_sep16_scaffold_2162
Phylum: Rokubacteria (66.67%)
6 5028 bp 72.99 10.29 98.87
PLM1_100_coex_sep16_scaffold_5349
Phylum: Rokubacteria (100%)
5 3137 bp 72.65 10.28 99.55
PLM1_100_coex_sep16_scaffold_10580
Species: RBG_16_Betaproteobacteria_66_20_curated (60%)
5 3664 bp 68.23 10.28 98.50
PLM1_100_coex_sep16_scaffold_3105
Domain: Bacteria (71.43%)
7 5398 bp 69.47 10.28 92.31
PLM1_100_coex_sep16_scaffold_16501
Phylum: Rokubacteria (83.33%)
6 2557 bp 71.06 10.27 96.83
PLM1_100_coex_sep16_scaffold_8092
Class: Deltaproteobacteria (50%)
4 4118 bp 70.42 10.27 100.46
Displaying items 351-400 of 679 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.