ggKbase home page

PLM1_30_coex_sep16_scaffold_3112_1

Organism: PLM1_30_coex_sep16_Rokubacteria_70_9

near complete RP 46 / 55 MC: 7 BSCG 47 / 51 MC: 4 ASCG 10 / 38
Location: comp(2..2749)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 83.8
  • Coverage: 917.0
  • Bit_score: 1531
  • Evalue 0.0
rpoB; DNA-directed RNA polymerase subunit beta similarity KEGG
DB: KEGG
  • Identity: 61.8
  • Coverage: 920.0
  • Bit_score: 1127
  • Evalue 0.0
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 91.0
  • Coverage: 916.0
  • Bit_score: 1658
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 2748
ATGGCAGGCACGATTCAGTGTGGGCGTCGCAGTCGTCGGGACTTCGGGAAGATCCCGTCCATCGTGGAGATCCCGAACCTCATCGAGGTGCAGAAGCGTTCCTACGAGACGTTTCTGCAGAAGGACGTCCCCGCCGAGCGACGGGAGGAGATCGGGCTGCAGGCGGTGTTCAAGTCGGTGTTTCCCATCGCCGACTACAACGACAACGCGCTGCTCGAGTTCGACTCGTACCATTTCGGGGATCCGAAGTACACGGTGGAGGAGTGCCACGATCGCGGCATGACCTTCGCGATCCCGCTGAAGGTCACGTTACGCCTGGTCGTGTTCGACCATGACAAAGAAGCCAAGACCAAGACCATCCGCGAGCAGCGCGGCCAGGAGGTCTACCTGGGCGAGCTGCCCCTCATGACGGAGAAGGGCACCTTCATCATCAACGGCACCGAGCGCGTGGTCGTCAGCCAGCTGCAGCGCTCGGCCGGCGTCTTCTTCGACGATGACAAGGGCAAGACGCTGGCGTCCGGCAAGCCGCTCTACTCGGCCCGGGTCATCCCCTACCGGGGCTCATGGGTGGAGTTCGACTTCGACGCCAACGACCTGCTGCACGTGCGCGTCGACCGGCGCCGGAAGATGTACGCCACCGCCTTCCTGCGCGCGTTCCACTTCCTGGAGAAGAGCGCGCCGAACAACCCGCAGATCCTCTCCGACGAAGAGCTCCTGGCCCAGTTCTACGACACCGAGGAGGTGCTGAGCTTCGAGGACGGCAACGCCTGGGTGCGCGTGCATCCGGAGGCGTCGGTGGGGGCCAAGGTGGCCGACGACGTCAAGCCGCCCCGTCACCGCGAGCCGATCGTCACCGCCGGCAAGGTGCTCAACGCCAAGCTGGTCGAGAAGCTGGTCGAGGCCAACGTCGAGAAGATCCCGGTGCGGGCCGAGGCGCTGGTCGGCCGGCGCACGGCCACCCGCGTCGTCGACACCGAGAGCGGCGAGGTGCTGGTCGGCACCAACACCGAGCTGACCTCGACCGTGCTGACGCAGGTGATGAGCCGCCGGGTGGCGCCGTTCAAGCTGCTGGTGCTCACTCCCGGCAAGATCGACGCCTCGCTCTACGAGACGCTGGCCCGCGATCACGTCAAGAACCCCGACGAGGCGCTGGTCGAGATCTACCGCAAGCTGCGGCCGGGCGACCCGCCCACCGTGGAGTCGGCCCGCGCCCTCTTCCGTGGCATGTTCATCGACGCCCGTCGCTACGACCTCGCCCGCGTCGGCCGCTTCATGATCAACGAGAAGCTGAGTATCGATGCCCCGGCCAGTACGAAGACCCTGCGCAGCGAGGACATCGTCTTCGTCATCCGGCACCTGCTGACGGTCAAGCTCGGCAGCAAGCCGACCGACGACATCGACCATCTCGGCAACCGGCGCGTCCGCTCGGTCGGCGAGCTGCTGGAGAACCAGTTCCGGGTCGGCCTCACGCGGATGGAGCGCGCGGTCAAGGAACGGATGTCGATCTCCGACATCACGAACCTGATGCCCCACGACCTGATCAACGCGAAGCCCGTCTCCGCGGTGGTCAAGGAGTTCTTCGGCTCGTCGCAGCTCTCGCAGTTCATGGACCAGACCAATCCGCTGGCCGAGCTGACCCACAAGCGCCGGCTGTCGGCCCTCGGTCCGCGCGGTCTGAGCCGTGAGCGCGCCGGGTTCGAGGTCCGCGACGTGCACCCGACCCACTACGGGCGGATCTGCCCGATCGAGACGCCGGAAGGCCCCAACATCGGCCTCATCTCGTCGCTGTCGACGTACGCCCGCACCAACGAGTTCGGCTTCATCGAGACGCCGTACCGCAAGGTGGTCAGCGGCAAGGTGACCGACGAGATCGAGTTCCTCACCGCGCTGAAGGAGGAAAAGTTCGTCATCGCCCAGGCCAACGCGGAGATCGACCGTAACGGCAAGTTCATGCAGGAGCGCGTGTCGGCCCGGCGCGCCGGTGAGTACCGGATGGTGGGGCCGGAAGAGCTCCACTACATGGACGTGTCGCCCAAGCAGCTGGTGTCGGTGGCGGCCGCCCTCATCCCGTTTCTCGAAAATGACGACGCCAACCGCGCGCTCATGGGCTCCAACATGCAGCGGCAGGCGGTCCCGTTGCTGCAGCCGGAGGCGCCCCTGGTGGGCACCGGCATGGAGCACGTCGTCGCCCGCGACTCCGGCTCGGTGGTGGTCGCCAAGCGGCCCGGCGTGGTGGAGTACGTGTCGGCCGACCGGGTGGTGGTGCGGGCGGAGAGCCGGTCCAAGAAGGCCGACCCCGTCCAGGACCTGCCGCTCGACATCTTCAACCTGACCAAGTACCGCCGGTCGAACCAGAACACCTGCATCAACCAGAAGCCGATCGTGCGGAAGGGCCAGCGGGTGGCGGTCGGCGACGTCATCGCCGACGGGCCGGCCACCGACCAGGGGGAGCTGGCGCTCGGCCGCAACGTGCTGGTCGCCTTCATGCCGTGGGGCGGGTACAACTTCGAGGACGCCATCCTCGTGTCGGAGCGGCTGGTCAAGGACGACCGCTTCACCTCGATCCACATCGAGGAGTTCGAGGTCCAGGCCCGCGACACGAAGCTGGGGAAGGAGGAAGTGACCCGCGACATCCCGAACGTCTCCGAGGAGGCCCTGAAGGATCTGGACGATTCGGGGATCGTGCGGATCGGCGCGAAGGTCAAGGCCGGAGACATCCTGGTCGGAAAGATCACGCCGAAGGGTGAG
PROTEIN sequence
Length: 916
MAGTIQCGRRSRRDFGKIPSIVEIPNLIEVQKRSYETFLQKDVPAERREEIGLQAVFKSVFPIADYNDNALLEFDSYHFGDPKYTVEECHDRGMTFAIPLKVTLRLVVFDHDKEAKTKTIREQRGQEVYLGELPLMTEKGTFIINGTERVVVSQLQRSAGVFFDDDKGKTLASGKPLYSARVIPYRGSWVEFDFDANDLLHVRVDRRRKMYATAFLRAFHFLEKSAPNNPQILSDEELLAQFYDTEEVLSFEDGNAWVRVHPEASVGAKVADDVKPPRHREPIVTAGKVLNAKLVEKLVEANVEKIPVRAEALVGRRTATRVVDTESGEVLVGTNTELTSTVLTQVMSRRVAPFKLLVLTPGKIDASLYETLARDHVKNPDEALVEIYRKLRPGDPPTVESARALFRGMFIDARRYDLARVGRFMINEKLSIDAPASTKTLRSEDIVFVIRHLLTVKLGSKPTDDIDHLGNRRVRSVGELLENQFRVGLTRMERAVKERMSISDITNLMPHDLINAKPVSAVVKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPRGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSTYARTNEFGFIETPYRKVVSGKVTDEIEFLTALKEEKFVIAQANAEIDRNGKFMQERVSARRAGEYRMVGPEELHYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLQPEAPLVGTGMEHVVARDSGSVVVAKRPGVVEYVSADRVVVRAESRSKKADPVQDLPLDIFNLTKYRRSNQNTCINQKPIVRKGQRVAVGDVIADGPATDQGELALGRNVLVAFMPWGGYNFEDAILVSERLVKDDRFTSIHIEEFEVQARDTKLGKEEVTRDIPNVSEEALKDLDDSGIVRIGAKVKAGDILVGKITPKGE