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PLM1_30_coex_sep16_scaffold_3112

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_30_coex_sep16_scaffold_3112_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..2749)
DNA (2748bp) protein (916aa)
DNA-directed RNA polymerase subunit beta bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpoB; DNA-directed RNA polymerase subunit beta
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_30_coex_sep16_scaffold_3112_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(2806..3195)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplL; 50S ribosomal subunit protein L7/L12
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_30_coex_sep16_scaffold_3112_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(3216..3839)
DNA (624bp) protein (208aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_30_coex_sep16_scaffold_3112_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(3850..4569)
DNA (720bp) protein (240aa)
50S ribosomal protein L1 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplA; 50S ribosomal protein L1
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_30_coex_sep16_scaffold_3112_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(4579..4998)
DNA (420bp) protein (140aa)
50S ribosomal protein L11 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplK; 50S ribosomal protein L11
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_30_coex_sep16_scaffold_3112_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4995..5546)
DNA (552bp) protein (184aa)
Transcription antitermination protein nusG bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription antitermination protein nusG
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_30_coex_sep16_scaffold_3112_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5548..5757)
DNA (210bp) protein (70aa)
Preprotein translocase, SecE subunit bin=GWF2_Methylomirabilis_70_14 species=Ruminococcus albus genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
preprotein translocase subunit SecE
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_30_coex_sep16_scaffold_3112_trna_1
unknown

Not on your lists

comp(5803..5876)
DNA (74bp)
transferRNA Trp
PLM1_30_coex_sep16_scaffold_3112_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(5894..6043)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 bin=GWF2_Methylomirabilis_70_14 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosomal protein L33
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_30_coex_sep16_scaffold_3112_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6047..6187)
DNA (141bp) protein (47aa)
Elongation factor Tu bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tufB; Elongation factor Tu (EF-Tu)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 10 items

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