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PLM1_30_coex_sep16_scaffold_3195

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_30_coex_sep16_scaffold_3195_1
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..721)
DNA (720bp) protein (240aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=L0A737_DEIPD
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like type {ECO:0000313|EMBL:EYD76578.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
oligopeptide/dipeptide ABC transporter ATP-binding protein
PLM1_30_coex_sep16_scaffold_3195_2
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(714..1724)
DNA (1011bp) protein (337aa)
peptide ABC transporter ATP-binding protein Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE9A9
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:EYD76577.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
ABC transporter ATP-binding protein
PLM1_30_coex_sep16_scaffold_3195_3
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1708..2586)
DNA (879bp) protein (293aa)
Nickel ABC transporter permease Tax=Brevibacillus panacihumi W25 RepID=V6MAE4_9BACL
Dipeptide transport system permease protein DppC {ECO:0000313|EMBL:EYD76576.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
Binding-protein-dependent transport systems inner membrane component precursor
PLM1_30_coex_sep16_scaffold_3195_4
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2583..3521)
DNA (939bp) protein (313aa)
Binding-protein-dependent transport systems inner membrane component Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CA61_SPHTD
Peptide ABC transporter, permease protein {ECO:0000313|EMBL:EYD76575.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
binding-protein-dependent transport systems inner membrane component
PLM1_30_coex_sep16_scaffold_3195_5
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3518..4351)
DNA (834bp) protein (278aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:EYD76574.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYD76574.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
Putative dehydrogenase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KXR0_THERP
putative dehydrogenase
PLM1_30_coex_sep16_scaffold_3195_6
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4348..5175)
DNA (828bp) protein (276aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:EYD76573.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYD76573.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
carveol dehydrogenase (EC:1.1.1.275)
Putative carveol dehydrogenase Tax=Nocardia asteroides NBRC 15531 RepID=U5EEL1_NOCAS
PLM1_30_coex_sep16_scaffold_3195_7
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5172..5603)
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:EYD76572.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
PLM1_30_coex_sep16_scaffold_3195_8
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5683..6075)
DNA (393bp) protein (131aa)
diguanylate cyclase Tax=Rhizobium mongolense RepID=UPI0003B2EE98
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:EYD76571.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
ABC transporter periplasmic protein
PLM1_30_coex_sep16_scaffold_3195_9
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6087..7244)
DNA (1158bp) protein (386aa)
Dipeptide transporter DppA homolog Tax=Ochrobactrum anthropi RepID=Q9LCD3_OCHAN
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:EYD76571.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
putative extracellular solute-binding protein, family 5
PLM1_30_coex_sep16_scaffold_3195_10
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7260..8324)
DNA (1065bp) protein (355aa)
putative oxidoreductase Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI00028A1B14
Putative oxidoreductase {ECO:0000313|EMBL:EYD76570.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
hypothetical protein
PLM1_30_coex_sep16_scaffold_3195_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(8321..9163)
DNA (843bp) protein (281aa)
Transcriptional regulator, IclR family Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI45_9BACT
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:CBE69338.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM1_30_coex_sep16_scaffold_3195_12
unknown

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9519..10121
DNA (603bp) protein (201aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI0003829DB8
PLM1_30_coex_sep16_scaffold_3195_13
RBG_13_Chloroflexi_60_9_curated, Chloroflexi, Bacteria

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10108..10425
DNA (318bp) protein (106aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI000360765C
transcriptional regulator
Tax=RBG_13_Chloroflexi_60_9_curated
PLM1_30_coex_sep16_scaffold_3195_trna_1
unknown

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10529..10601
DNA (73bp)
transferRNA Gly
PLM1_30_coex_sep16_scaffold_3195_14
unknown

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comp(10678..10884)
DNA (207bp) protein (69aa)

This feature has no annotations

Displaying 15 items

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