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PLM1_5_b1_sep16_scaffold_1706

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_5_b1_sep16_scaffold_1706_1
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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2..370
DNA (369bp) protein (123aa)
Putative YabE protein Tax=Listeria ivanovii (strain ATCC BAA-678 / PAM 55) RepID=G2Z9H5_LISIP
hypothetical protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_5_b1_sep16_scaffold_1706_2
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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409..1089
DNA (681bp) protein (227aa)
Two component transcriptional regulator, LuxR family Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8I3_CONWI
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADB50947.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_5_b1_sep16_scaffold_1706_3
unknown

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comp(1086..1400)
DNA (315bp) protein (105aa)

This feature has no annotations

PLM1_5_b1_sep16_scaffold_1706_4
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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1540..2754
DNA (1215bp) protein (405aa)
D-alanyl-D-alanine carboxypeptidase Tax=Patulibacter medicamentivorans RepID=H0E8S5_9ACTN
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_5_b1_sep16_scaffold_1706_5
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(2819..3862)
DNA (1044bp) protein (348aa)
det:DET0596 ligA; DNA ligase, NAD-dependent (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
NAD-dependent DNA ligase (EC:6.5.1.2)
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_5_b1_sep16_scaffold_1706_6
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(3859..4674)
DNA (816bp) protein (272aa)
DNA ligase (EC:6.5.1.2)
DNA ligase Tax=Thiorhodovibrio sp. 970 RepID=H8Z3Z7_9GAMM
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_5_b1_sep16_scaffold_1706_7
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(4631..5266)
DNA (636bp) protein (212aa)
HAD-superfamily hydrolase subfamily IA, variant 3 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATN9_RUBXD
HAD family hydrolase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_5_b1_sep16_scaffold_1706_8

Not on your lists

comp(5290..6006)
DNA (717bp) protein (239aa)
tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A Tax=Patulibacter medicamentivorans RepID=H0E8R9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KKK53420.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM1_5_b1_sep16_scaffold_1706_9
Thermobaculum terrenum, Thermobaculum, Bacteria

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6085..6561
DNA (477bp) protein (159aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIN6_THET1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ43607.1}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM1_5_b1_sep16_scaffold_1706_10
unknown

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comp(6533..6856)
DNA (324bp) protein (108aa)

This feature has no annotations

PLM1_5_b1_sep16_scaffold_1706_11
bacterium UASB270, Bacteria

Not on your lists


comp(6869..7264)
DNA (396bp) protein (132aa)
50S ribosomal protein L17 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4L5B7_9DELT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; species="Bacteria.;" source="bacterium UASB270.;"
50S ribosomal protein L17
PLM1_5_b1_sep16_scaffold_1706_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(7267..8247)
DNA (981bp) protein (327aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
DNA-directed RNA polymerase subunit alpha Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EYS1_CONWI
DNA-directed RNA polymerase subunit alpha
PLM1_5_b1_sep16_scaffold_1706_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(8337..8834)
DNA (498bp) protein (166aa)
30S ribosomal protein S4 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WS74_KYRT2
30S ribosomal protein S4
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_5_b1_sep16_scaffold_1706_14
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(8834..9238)
DNA (405bp) protein (135aa)
30S ribosomal protein S11 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EYS0_CONWI
30S ribosomal protein S11
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_5_b1_sep16_scaffold_1706_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists


comp(9239..9622)
DNA (384bp) protein (128aa)
30S ribosomal protein S13 Tax=Brevibacillus RepID=J2HTJ7_9BACL
30S ribosomal protein S13
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_5_b1_sep16_scaffold_1706_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(9737..9868)
DNA (132bp) protein (44aa)
translation initiation factor IF-1 Tax=Desulfovibrio longus RepID=UPI0003B71C95
Translation initiation factor 1
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying 16 items

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