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PLM1_60_b1_redo_sep16_scaffold_320

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_320_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1..579)
DNA (579bp) protein (193aa)
FeS cluster assembly protein SufB Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I9N0_NITGG
sufB; FeS cluster assembly protein SufB
FeS cluster assembly protein SufB {ECO:0000313|EMBL:AFU58026.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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744..1415
DNA (672bp) protein (224aa)
Putative siroheme synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INE5_NITGG
siroheme synthase
Putative siroheme synthase {ECO:0000313|EMBL:AFU59234.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1412..2686
DNA (1275bp) protein (425aa)
hemA; glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glutamyl-tRNA reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJD3_NITGG
PLM1_60_b1_redo_sep16_scaffold_320_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2673..3680
DNA (1008bp) protein (336aa)
hemB1; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Delta-aminolevulinic acid dehydratase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKZ6_NITGG
PLM1_60_b1_redo_sep16_scaffold_320_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3721..4992
DNA (1272bp) protein (424aa)
hemL2; glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glutamate-1-semialdehyde 2,1-aminomutase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHX3_NITGG
PLM1_60_b1_redo_sep16_scaffold_320_6
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4976..5938
DNA (963bp) protein (321aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Probable porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Probable porphobilinogen deaminase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INK5_NITGG
PLM1_60_b1_redo_sep16_scaffold_320_7

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5920..6723
DNA (804bp) protein (268aa)
Siroheme synthase protein {ECO:0000313|EMBL:KFM19843.1}; EC=2.1.1.107 {ECO:0000313|EMBL:KFM19843.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-P11.;"
Uroporphyrin-III C-methyltransferase Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A1A2_NITMS
uroporphyrin-III C-methyltransferase
PLM1_60_b1_redo_sep16_scaffold_320_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6759..7574
DNA (816bp) protein (272aa)
uroporphyrinogen-III synthase (EC:4.2.1.75 2.1.1.107)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:AIF83084.1}; EC=2.1.1.107 {ECO:0000313|EMBL:AIF83084.1};; EC=4.2.1.75 {ECO:0000313|EMBL:AIF83084.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Uroporphyrinogen III synthase HEM4 Tax=Thaumarchaeota archaeon N4 RepID=V6AQJ8_9ARCH
PLM1_60_b1_redo_sep16_scaffold_320_9
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7656..8633
DNA (978bp) protein (326aa)
DNA repair and recombination protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHL5_NITGG
radA3; DNA repair and recombination protein RadA
DNA repair and recombination protein RadA {ECO:0000313|EMBL:AIC17118.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_320_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8752..9033
DNA (282bp) protein (94aa)
50S ribosomal protein L21e Tax=Candidatus Nitrososphaera gargensis RepID=K0INI7_NITGG
rpl21e; 50S ribosomal protein L21e
50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9071..9379
DNA (309bp) protein (103aa)
Putative RNA polymerase Rpb4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJP5_NITGG
rpb4; RNA polymerase Rpb4
Putative RNA polymerase Rpb4 {ECO:0000313|EMBL:AFU59443.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_12
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9417..10016
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILD6_NITGG
putative RNA-binding protein
Putative RNA-binding protein {ECO:0000313|EMBL:AIF83167.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_320_13
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10006..10740
DNA (735bp) protein (245aa)
dimethyladenosine transferase (rRNA methylation) (EC:2.1.1.182)
Dimethyladenosine transferase (RRNA methylation) {ECO:0000313|EMBL:AIF83168.1}; EC=2.1.1.182 {ECO:0000313|EMBL:AIF83168.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative ribosomal RNA small subunit methyltransferase A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDG2_NITGG
PLM1_60_b1_redo_sep16_scaffold_320_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10776..11312
DNA (537bp) protein (179aa)
Putative N6 adenine-specific DNA methyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHL1_NITGG
N6 adenine-specific DNA methyltransferase
Putative N6 adenine-specific DNA methyltransferase {ECO:0000313|EMBL:AFU59440.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11345..12364)
DNA (1020bp) protein (340aa)
icd; isocitrate/isopropylmalate dehydrogenase (EC:1.1.1.- 1.1.1.41)
Isocitrate/isopropylmalate dehydrogenase {ECO:0000313|EMBL:AFU59439.1}; EC=1.1.1.- {ECO:0000313|EMBL:AFU59439.1};; EC=1.1.1.41 {ECO:0000313|EMBL:AFU59439.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Isocitrate/isopropylmalate dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INI6_NITGG
PLM1_60_b1_redo_sep16_scaffold_320_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12397..12951)
DNA (555bp) protein (185aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJP1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC17125.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_320_17
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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13113..13559
DNA (447bp) protein (149aa)
uncharacterized LOC101493138 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin1_lowGC organism_group=Unknown_CP
rnhA; Ribonuclease HI
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM1_60_b1_redo_sep16_scaffold_320_18
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13657..14181
DNA (525bp) protein (175aa)
Putative signal peptidase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJU8_NITGG
signal peptidase I
Signal peptidase I {ECO:0000313|EMBL:AIF82700.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_320_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14528..15409
DNA (882bp) protein (294aa)
Small GTP-binding protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIF3_NITGG
small GTP-binding protein
Small GTP-binding protein {ECO:0000313|EMBL:AFU58783.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15463..17214
DNA (1752bp) protein (584aa)
Radical SAM domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIU4_NITGG
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:AFU59885.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(17258..17836)
DNA (579bp) protein (193aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative 3-methyladenine DNA glycosylase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMX1_NITGG
3-methyladenine DNA glycosylase
PLM1_60_b1_redo_sep16_scaffold_320_22
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18247..18498
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP17_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15963.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_320_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(18495..18956)
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJT1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60345.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_24
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19365..19682
DNA (318bp) protein (106aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJR6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15661.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_320_25
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(19739..20179)
DNA (441bp) protein (147aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B4F9_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83728.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_320_26
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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20312..21322
DNA (1011bp) protein (337aa)
purA; adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Adenylosuccinate synthetase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG12_NITGG
PLM1_60_b1_redo_sep16_scaffold_320_27
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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21402..22082
DNA (681bp) protein (227aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILE0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60348.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_28
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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22075..22833
DNA (759bp) protein (253aa)
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000313|EMBL:AFU60349.1}; EC=4.1.1.23 {ECO:0000313|EMBL:AFU60349.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Orotidine 5'-phosphate decarboxylase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP18_NITGG
PLM1_60_b1_redo_sep16_scaffold_320_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(23007..23447)
DNA (441bp) protein (147aa)
Putative NUDIX hydrolase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJT5_NITGG
NUDIX hydrolase
Putative NUDIX hydrolase {ECO:0000313|EMBL:AFU60350.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_320_30
unknown

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comp(23479..23628)
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying items 1-30 of 50 in total

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