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PLM1_60_b1_redo_sep16_scaffold_499

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_499_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(128..1663)
DNA (1536bp) protein (512aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Inosine-5'-monophosphate dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ19_NITGG
PLM1_60_b1_redo_sep16_scaffold_499_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1660..2535)
DNA (876bp) protein (292aa)
Putative dihydropteroate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF65_NITGG
dihydropteroate synthase
Putative dihydropteroate synthase {ECO:0000313|EMBL:AFU60006.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2711..5386
DNA (2676bp) protein (892aa)
Putative glycogen debranching enzyme Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJU0_NITGG
Putative glycogen debranching enzyme {ECO:0000313|EMBL:AFU58537.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
glycogen debranching enzyme
PLM1_60_b1_redo_sep16_scaffold_499_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5462..6466
DNA (1005bp) protein (335aa)
Diphthamide biosynthesis protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFW9_NITGG
diphthamide biosynthesis protein
Diphthamide biosynthesis protein {ECO:0000313|EMBL:AFU57708.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_5
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7476..8345)
DNA (870bp) protein (290aa)
Putative ATPase, PP-loop superfamily Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMC3_NITGG
putative PP-loop superfamily ATPase
Putative PP-loop superfamily ATPase {ECO:0000313|EMBL:AIC15515.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_499_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8552..9031
DNA (480bp) protein (160aa)
Putative HTH-type transcriptional regulator, AsnC family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG29_NITGG
HTH-type transcriptional regulator, AsnC family
Putative HTH-type transcriptional regulator, AsnC family {ECO:0000313|EMBL:AFU57763.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9059..9172)
DNA (114bp) protein (38aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIB6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57762.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_8
CSP1_5_NC10, NC10, Bacteria

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comp(9368..10237)
DNA (870bp) protein (290aa)
hemD; uroporphyrinogen-III synthase (EC:4.2.1.75); K01719 uroporphyrinogen-III synthase [EC:4.2.1.75] bin=bin3_NC10 species=Bacillus megaterium genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
hemD; uroporphyrinogen-III synthase (EC:4.2.1.75)
Tax=CSP1_5_NC10
PLM1_60_b1_redo_sep16_scaffold_499_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11476..11889)
DNA (414bp) protein (138aa)
DUF126 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIB4_NITGG
hypothetical protein
DUF126 domain-containing protein {ECO:0000313|EMBL:AFU57757.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11900..13060)
DNA (1161bp) protein (387aa)
Putative aconitase subunit 1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I906_NITGG
aconitase subunit 1
Putative aconitase subunit 1 {ECO:0000313|EMBL:AFU57756.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_11

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13181..13441
DNA (261bp) protein (87aa)
Uncharacterized protein Tax=uncultured archaeon RepID=I3RKI4_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AFK24844.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_499_12
uncultured marine crenarchaeote HF4000_APKG3K8, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(13598..14518)
DNA (921bp) protein (307aa)
Putative ABC transporter Tax=uncultured marine crenarchaeote HF4000_APKG3K8 RepID=B3T7Y5_9ARCH
Putative ABC transporter {ECO:0000313|EMBL:ABZ08694.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote HF4000_APKG3K8.;"
oligopeptide/dipeptide ABC transporter ATPase
PLM1_60_b1_redo_sep16_scaffold_499_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(14660..16087)
DNA (1428bp) protein (476aa)
Putative amidohydrolase family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMW0_NITGG
amidohydrolase family protein
Putative amidohydrolase family protein {ECO:0000313|EMBL:AFU58309.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_14
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(16146..17195)
DNA (1050bp) protein (350aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|SAAS:SAAS00011232}; EC=6.1.1.1 {ECO:0000256|SAAS:SAAS00011232};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Tyrosine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEX0_NITGG
PLM1_60_b1_redo_sep16_scaffold_499_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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17308..17463
DNA (156bp) protein (52aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIV0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59895.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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17543..19456
DNA (1914bp) protein (638aa)
top6B; putative topoisomerase IIB, subunitB (EC:5.99.1.3)
Type 2 DNA topoisomerase 6 subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00322};; Type II DNA topoisomerase VI subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Type 2 DNA topoisomerase 6 subunit B Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEW2_NITGG
PLM1_60_b1_redo_sep16_scaffold_499_17
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19470..20576
DNA (1107bp) protein (369aa)
top6A; Topoisomerase IIB, subunitA (EC:5.99.1.3)
Topoisomerase IIB, subunitA {ECO:0000313|EMBL:AIC17107.1}; EC=5.99.1.3 {ECO:0000313|EMBL:AIC17107.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Type 2 DNA topoisomerase 6, subunit A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM18_NITGG
PLM1_60_b1_redo_sep16_scaffold_499_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(20626..22134)
DNA (1509bp) protein (503aa)
Glycosyl transferase family 2 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INE3_NITGG
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AFU59224.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(22242..23267)
DNA (1026bp) protein (342aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHA0_NITGG
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:AFU59285.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_trna_1
unknown

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23843..23950
DNA (108bp)
transferRNA Ala
PLM1_60_b1_redo_sep16_scaffold_499_20
unknown

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24118..24411
DNA (294bp) protein (98aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_499_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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24656..24982
DNA (327bp) protein (109aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHG8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59370.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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25302..25691
DNA (390bp) protein (130aa)
Zinc finger C2H2 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJS0_NITGG
zinc finger C2H2 domain-containing protein
Zinc finger C2H2 domain-containing protein {ECO:0000313|EMBL:AFU59468.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(25707..26261)
DNA (555bp) protein (185aa)
Putative tRNA (Guanine-N(7)-)-methyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILF7_NITGG
tRNA (guanine-N(7)-)-methyltransferase
Putative tRNA (Guanine-N(7)-)-methyltransferase {ECO:0000313|EMBL:AFU59467.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_24
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(26321..26923)
DNA (603bp) protein (201aa)
DUF59 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDI7_NITGG
putative metal-sulfur cluster biosynthetic enzyme
Putative metal-sulfur cluster biosynthetic enzyme {ECO:0000313|EMBL:AIF83045.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_499_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(26969..28045)
DNA (1077bp) protein (359aa)
mtnA; translation initiation factor, aIF-2BI family (EC:5.3.1.23)
Putative methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; MTNA-like protein {ECO:0000256|HAMAP-Rule:MF_01678}; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative methylthioribose-1-phosphate isomerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHQ3_NITGG
PLM1_60_b1_redo_sep16_scaffold_499_26
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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28509..29234
DNA (726bp) protein (242aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGR1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59020.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_499_27
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(29377..30000)
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I6U7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82119.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_499_28
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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30233..30619
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID31_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF85079.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_499_29
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(30697..31395)
DNA (699bp) protein (233aa)
Trypsin Tax=Candidatus Nitrosoarchaeum RepID=S2E5F4_9ARCH
Trypsin {ECO:0000313|EMBL:EPA04721.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
putative 2-alkenal reductase
Displaying 30 items

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