ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_606

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_606_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(3..1031)
DNA (1029bp) protein (343aa)
glyS; glycine--tRNA ligase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000313|EMBL:AFU59469.1}; EC=6.1.1.14 {ECO:0000313|EMBL:AFU59469.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glycine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INJ2_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(1135..2001)
DNA (867bp) protein (289aa)
nfo; endonuclease 4 (EC:3.1.21.2)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Probable endonuclease 4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB43_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

2112..3101
DNA (990bp) protein (330aa)
priB; DNA primase, large subunit (EC:2.7.7.-)
DNA primase large subunit PriL Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFG0_NITGG
DNA primase large subunit PriL {ECO:0000256|HAMAP-Rule:MF_00701}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_4
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3102..4250
DNA (1149bp) protein (383aa)
eukaryotic-type DNA primase, catalytic (small) subunit (EC:2.7.7.-)
DNA primase small subunit PriS {ECO:0000256|HAMAP-Rule:MF_00700, ECO:0000256|SAAS:SAAS00011001}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00700, ECO:0000256|SAAS:SAAS00010998};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
DNA primase small subunit PriS Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN08_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_5
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

4392..4934
DNA (543bp) protein (181aa)
GMP synthase family protein (EC:6.3.5.2)
GMP synthase family protein {ECO:0000313|EMBL:AIF84025.1}; EC=6.3.5.2 {ECO:0000313|EMBL:AIF84025.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative GMP synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB33_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

4971..5942
DNA (972bp) protein (324aa)
TPR repeat protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFF6_NITGG
hypothetical protein
TPR repeat protein {ECO:0000313|EMBL:AFU58545.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(6051..7220)
DNA (1170bp) protein (390aa)
Putative glycosyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIC3_NITGG
putative glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:AIC14646.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_606_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(7353..7967)
DNA (615bp) protein (205aa)
Protein Ngar_c17860 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN42_NITGG
AMMECR1 domain-containing protein
Protein Ngar_c17860 {ECO:0000256|HAMAP-Rule:MF_00645}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(8004..9011)
DNA (1008bp) protein (336aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIY6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59058.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

9099..9506
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INB0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59059.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(9465..10199)
DNA (735bp) protein (245aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGU0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59060.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_trna_2
unknown

Not on your lists

comp(10331..10404)
DNA (74bp)
transferRNA Ala
PLM1_60_b1_redo_sep16_scaffold_606_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

10549..10995
DNA (447bp) protein (149aa)
Putative NUDIX hydrolase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGU3_NITGG
NUDIX hydrolase
Putative NUDIX hydrolase {ECO:0000313|EMBL:AFU59065.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_13
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

11069..12643
DNA (1575bp) protein (525aa)
Putative radical SAM domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKN7_NITGG
putative radical SAM domain protein
Putative radical SAM domain protein {ECO:0000313|EMBL:AIC15010.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_606_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(12665..13006)
DNA (342bp) protein (114aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIZ5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59068.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(13083..13925)
DNA (843bp) protein (281aa)
Putative oxidoreductase FAD/NAD(P)-binding subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INB2_NITGG
oxidoreductase FAD/NAD(P)-binding subunit
Putative oxidoreductase FAD/NAD(P)-binding subunit {ECO:0000313|EMBL:AFU59069.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

14134..14424
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGV8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59085.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_17
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(14433..15302)
DNA (870bp) protein (290aa)
putative fumarylacetoacetate hydrolase (EC:3.-.-.-)
Putative fumarylacetoacetate hydrolase {ECO:0000313|EMBL:AIC15020.1}; EC=3.-.-.- {ECO:0000313|EMBL:AIC15020.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Putative fumarylacetoacetate hydrolase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKP8_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(15308..17056)
DNA (1749bp) protein (583aa)
gltX; glutamate--tRNA ligase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|SAAS:SAAS00088701}; EC=6.1.1.17 {ECO:0000256|SAAS:SAAS00088701};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Glutamate--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ10_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_19
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17061..18062)
DNA (1002bp) protein (334aa)
gds; geranylgeranyl pyrophosphate synthase (EC:2.5.1.1 2.5.1.10)
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:AIC15022.1}; EC=2.5.1.1 {ECO:0000313|EMBL:AIC15022.1};; EC=2.5.1.10 {ECO:0000313|EMBL:AIC15022.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Geranylgeranyl pyrophosphate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INB6_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_20
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(18050..19144)
DNA (1095bp) protein (365aa)
fni; isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Isopentenyl-diphosphate delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00354};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00354};; Isopentenyl diphosphate:dimethylallyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Type 2 isopentenyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Isopentenyl-diphosphate delta-isomerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGW0_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_21
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(19137..19916)
DNA (780bp) protein (260aa)
Aspartate/glutamate/uridylate kinase Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BAV3_9ARCH
aspartate/glutamate/uridylate kinase
Aspartate/glutamate/uridylate kinase {ECO:0000313|EMBL:AFS82115.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
PLM1_60_b1_redo_sep16_scaffold_606_22
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(19965..20951)
DNA (987bp) protein (329aa)
mevalonate kinase (EC:2.7.1.36)
Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; Short=MK {ECO:0000256|HAMAP-Rule:MF_00217};; Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217};; EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Mevalonate kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGT0_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(20948..21790)
DNA (843bp) protein (281aa)
MEMO1 family protein Ngar_c11120 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMN6_NITGG
hypothetical protein
MEMO1 family protein Ngar_c11120 {ECO:0000256|HAMAP-Rule:MF_00055}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_24
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(21787..22512)
DNA (726bp) protein (242aa)
30S ribosomal protein S2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IE52_NITGG
rps2p; 30S ribosomal protein S2p
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000256|SAAS:SAAS00012212}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_606_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(22514..23761)
DNA (1248bp) protein (416aa)
eno; enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Enolase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE56_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_26
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists


comp(23774..24010)
DNA (237bp) protein (79aa)
rpoN; DNA-directed RNA polymerase, subunit N (EC:2.7.7.6)
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
DNA-directed RNA polymerase subunit N Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I9R1_NITGG
PLM1_60_b1_redo_sep16_scaffold_606_trna_1
unknown

Not on your lists

24110..24194
DNA (85bp)
transferRNA Leu
PLM1_60_b1_redo_sep16_scaffold_606_27
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

24440..24856
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMP5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58079.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_606_28
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

24900..25442
DNA (543bp) protein (181aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84183.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Displaying items 1-30 of 33 in total

View Taxonomy