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PLM1_60_b1_redo_sep16_scaffold_686

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_686_1
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3..275)
DNA (273bp) protein (91aa)
Dolichyl-diphosphooligosaccharide--protein glycotransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFD7_NITGG
oligosaccharyl transferase STT3
Oligosaccharyl transferase STT3 {ECO:0000313|EMBL:AIC16797.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_686_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(553..1206)
DNA (654bp) protein (218aa)
Zn-dependent hydrolase of the beta-lactamase fold protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHY2_NITGG
Zn-dependent hydrolase
Zn-dependent hydrolase of the beta-lactamase fold protein {ECO:0000313|EMBL:AFU57527.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_686_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(1238..1633)
DNA (396bp) protein (132aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AVJ7_9ARCH
PilT domain protein
PilT domain protein {ECO:0000313|EMBL:AIF85071.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_686_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1867..2283
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0II17_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58578.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_686_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2311..2883)
DNA (573bp) protein (191aa)
Putative uracil DNA glycosylase superfamily protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF13_NITGG
uracil DNA glycosylase superfamily protein
Putative uracil DNA glycosylase superfamily protein {ECO:0000313|EMBL:AFU58365.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_686_6
unknown

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3144..3392
DNA (249bp) protein (83aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_686_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3572..4933
DNA (1362bp) protein (454aa)
DNA repair helicase RAD25 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE11_NITGG
xpb; putative DNA repair helicase XPB
Putative DNA repair helicase XPB {ECO:0000313|EMBL:AIC16469.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_686_8
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5016..6347)
DNA (1332bp) protein (444aa)
Putative helicase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEY5_NITGG
putative helicase
Putative helicase {ECO:0000313|EMBL:AIC14324.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_686_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6517..6783
DNA (267bp) protein (89aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q2V9D6_9CREN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82199.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_686_10
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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7064..9175
DNA (2112bp) protein (704aa)
F5/8 type C domain-containing protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CB18_MYXFH
F5/8 type C domain-containing protein
F5/8 type C domain-containing protein {ECO:0000313|EMBL:AEI68399.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM1_60_b1_redo_sep16_scaffold_686_11
uncultured crenarchaeote, Crenarchaeota, Archaea

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9354..10004
DNA (651bp) protein (217aa)
serB; phosphoserine phosphatase SerB (EC:3.1.3.3)
Putative phosphoserine phosphatase Tax=uncultured crenarchaeote RepID=Q2V9E2_9CREN
Putative phosphoserine phosphatase {ECO:0000313|EMBL:ABB88986.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
PLM1_60_b1_redo_sep16_scaffold_686_12
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10038..10802
DNA (765bp) protein (255aa)
F420-0:gamma-glutamyl ligase (EC:6.3.2.34 6.3.2.31)
F420-0:gamma-glutamyl ligase {ECO:0000313|EMBL:AIF84289.1}; EC=6.3.2.31 {ECO:0000313|EMBL:AIF84289.1};; EC=6.3.2.34 {ECO:0000313|EMBL:AIF84289.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
F420-0:gamma-L-glutamate ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICL6_NITGG
PLM1_60_b1_redo_sep16_scaffold_686_13
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10931..11185
DNA (255bp) protein (85aa)
Putative SirA family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICL2_NITGG
putative SirA family protein
Putative SirA family protein {ECO:0000313|EMBL:AIC15035.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_686_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11191..12183
DNA (993bp) protein (331aa)
cysM2; cysteine synthase (EC:2.5.1.47)
Cysteine synthase {ECO:0000313|EMBL:AFU59105.1}; EC=2.5.1.47 {ECO:0000313|EMBL:AFU59105.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Cysteine synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGX0_NITGG
PLM1_60_b1_redo_sep16_scaffold_686_15
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12185..13159)
DNA (975bp) protein (325aa)
thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:AIF84294.1}; EC=1.8.1.9 {ECO:0000313|EMBL:AIF84294.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Tthioredoxin reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ21_NITGG
PLM1_60_b1_redo_sep16_scaffold_686_16
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(13280..13885)
DNA (606bp) protein (202aa)
hypothetical protein
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM1_60_b1_redo_sep16_scaffold_686_17
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(14069..14884)
DNA (816bp) protein (272aa)
Putative ribose 1,5-bisphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00304}; EC=5.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00304};; Ribulose 1,5-bisphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00304}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative thiazole biosynthetic enzyme Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICK5_NITGG
thiazole-adenylate synthase
PLM1_60_b1_redo_sep16_scaffold_686_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14982..15287
DNA (306bp) protein (102aa)
Putative transcriptional regulator, ArsR family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM95_NITGG
arsR family transcriptional regulator
Putative transcriptional regulator, ArsR family {ECO:0000313|EMBL:AFU60122.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_686_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(15346..16458)
DNA (1113bp) protein (371aa)
TPR repeat protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INB7_NITGG
hypothetical protein
TPR repeat protein {ECO:0000313|EMBL:AFU59094.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_686_20
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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17513..18970
DNA (1458bp) protein (486aa)
Ammonium transporter NrgA Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP03_NITGG
amt2; ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_686_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19072..19758
DNA (687bp) protein (229aa)
Putative ribosome maturation protein SDO1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJH0_NITGG
ribosome maturation protein SDO1
Putative ribosome maturation protein SDO1 {ECO:0000313|EMBL:AFU59313.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_686_22
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19867..20670
DNA (804bp) protein (268aa)
Exosome complex component Rrp4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL40_NITGG
ribosomal RNA-processing protein RRP4
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_686_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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20657..21391
DNA (735bp) protein (245aa)
ecx2; exosome complex exonuclease (EC:3.1.13.-)
Exosome complex component Rrp41 {ECO:0000256|HAMAP-Rule:MF_00591}; EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00591};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Exosome complex component Rrp41 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID49_NITGG
PLM1_60_b1_redo_sep16_scaffold_686_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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21391..22224
DNA (834bp) protein (278aa)
ecx1; exosome complex exonuclease (EC:3.1.13.-)
Exosome complex component Rrp42 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHB2_NITGG
Exosome complex component Rrp42 {ECO:0000256|HAMAP-Rule:MF_00622}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_686_25
unknown

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comp(22458..22652)
DNA (195bp) protein (65aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_686_26
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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22733..23122
DNA (390bp) protein (130aa)
Prefoldin subunit beta Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID44_NITGG
pfdB; prefoldin, subunit beta
Prefoldin subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; GimC subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_686_27
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(23365..23823)
DNA (459bp) protein (153aa)
Putative transcriptional regulator, AsnC family Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILG5_NITGG
transcriptional regulator
Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:AIC16701.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_686_28
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(23911..24987)
DNA (1077bp) protein (359aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|RuleBase:RU004501}; EC=1.2.1.11 {ECO:0000256|RuleBase:RU004501};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Aspartate-semialdehyde dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I718_NITGG
asd; aspartate-semialdehyde dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_686_29
unknown

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comp(25395..26168)
DNA (774bp) protein (258aa)

This feature has no annotations

Displaying 29 items

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