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PLM1_60_b1_redo_sep16_scaffold_1288

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_1288_1
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1..249
DNA (249bp) protein (83aa)
chaperonin GroEL
Chaperonin GroEL {ECO:0000313|EMBL:AIF84949.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_1288_2

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comp(422..670)
DNA (249bp) protein (83aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM21776.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
urea amidohydrolase (urease) gamma subunit
PLM1_60_b1_redo_sep16_scaffold_1288_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(831..1979)
DNA (1149bp) protein (383aa)
agmatinase (EC:3.5.3.11)
Agmatinase {ECO:0000313|EMBL:AIF84945.1}; EC=3.5.3.11 {ECO:0000313|EMBL:AIF84945.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative arginase family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J6_9ARCH
PLM1_60_b1_redo_sep16_scaffold_1288_4
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2211..3743
DNA (1533bp) protein (511aa)
Putative Sodium:solute symporter family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J3_9ARCH
Na+/proline symporter
Na+/proline symporter {ECO:0000313|EMBL:AIF84942.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_1288_5
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3862..4389
DNA (528bp) protein (176aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84938.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_1288_6
unknown

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4582..4824
DNA (243bp) protein (81aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1288_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4966..5259)
DNA (294bp) protein (98aa)
DNA/RNA-binding protein Alba Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBZ0_NITGG
albA2; DNA/RNA-binding protein Alba
DNA/RNA-binding protein Alba {ECO:0000256|HAMAP-Rule:MF_01122}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_8
unknown

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comp(5408..5701)
DNA (294bp) protein (98aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1288_9
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5856..6299)
DNA (444bp) protein (148aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-137-I08 RepID=UPI0003635A65
response regulator receiver protein
Protein with response regulator receiver domain {ECO:0000313|EMBL:ACL04010.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
PLM1_60_b1_redo_sep16_scaffold_1288_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6430..6603)
DNA (174bp) protein (58aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGA9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58830.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_11
unknown

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comp(6756..7922)
DNA (1167bp) protein (389aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1288_12
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8142..9275
DNA (1134bp) protein (378aa)
dbh2; DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
DNA polymerase IV Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN64_NITGG
PLM1_60_b1_redo_sep16_scaffold_1288_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9437..10405)
DNA (969bp) protein (323aa)
Putative threonyl/alanyl--tRNA ligase, SAD Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEM1_NITGG
threonyl/alanyl--tRNA ligase, SAD
Putative threonyl/alanyl--tRNA ligase, SAD {ECO:0000313|EMBL:AFU57223.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_14
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(10405..11097)
DNA (693bp) protein (231aa)
Precorrin-8X methylmutase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK94_NITGG
putative cobalamin (vitamin B12) biosynthesis CbiX protein (modular protein)
Putative cobalamin (Vitamin B12) biosynthesis CbiX protein (Modular protein) {ECO:0000313|EMBL:AIC14632.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_1288_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11090..11851)
DNA (762bp) protein (254aa)
Putative cobalamin (Vitamin B12) biosynthesis CbiX protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IID0_NITGG
cobalamin (vitamin B12) biosynthesis CbiX protein
Putative cobalamin (Vitamin B12) biosynthesis CbiX protein {ECO:0000313|EMBL:AFU58733.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11853..12929)
DNA (1077bp) protein (359aa)
Cobalamin biosynthesis protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK96_NITGG
cbiG; cobalamin biosynthesis protein
Cobalamin biosynthesis protein {ECO:0000313|EMBL:AFU58737.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_17

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comp(13280..13870)
DNA (591bp) protein (197aa)
Uncharacterized protein {ECO:0000313|EMBL:AIF12616.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_56_D04.;"
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1288_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13824..14936)
DNA (1113bp) protein (371aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58772.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15055..15654
DNA (600bp) protein (200aa)
rpoE`; DNA-directed RNA polymerase, subunit E` (EC:2.7.7.6)
DNA-directed RNA polymerase, subunit E {ECO:0000313|EMBL:AFU58775.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AFU58775.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA-directed RNA polymerase, subunit E Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG60_NITGG
PLM1_60_b1_redo_sep16_scaffold_1288_20
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15655..15843
DNA (189bp) protein (63aa)
rpoE''; DNA-directed RNA polymerase, subunit E`` (EC:2.7.7.6)
Transcription elongation factor Spt4 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBW1_NITGG
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_1288_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15845..16723
DNA (879bp) protein (293aa)
nadC; nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250};; Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000256|PIRNR:PIRNR006250}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Nicotinate-nucleotide pyrophosphorylase [carboxylating] Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKA8_NITGG
PLM1_60_b1_redo_sep16_scaffold_1288_22
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(16784..17734)
DNA (951bp) protein (317aa)
quinolinate synthetase (EC:2.5.1.72)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Quinolinate synthase A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIF0_NITGG
PLM1_60_b1_redo_sep16_scaffold_1288_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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17903..18085
DNA (183bp) protein (61aa)
30S ribosomal protein S30e Tax=Candidatus Nitrososphaera gargensis RepID=K0IN54_NITGG
rps30e; 30S ribosomal protein S30e
30S ribosomal protein S30e {ECO:0000313|EMBL:AFU58779.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_24
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18182..19012
DNA (831bp) protein (277aa)
aspartate dehydrogenase (EC:1.4.1.21)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
L-aspartate dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IG64_NITGG
PLM1_60_b1_redo_sep16_scaffold_1288_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19067..19366
DNA (300bp) protein (100aa)
TRAM domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBW5_NITGG
TRAM domain-containing protein
TRAM domain-containing protein {ECO:0000313|EMBL:AFU58781.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_26
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19460..19873
DNA (414bp) protein (138aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKB0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58782.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_27
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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20486..20839
DNA (354bp) protein (118aa)
50S ribosomal protein L31e Tax=Candidatus Nitrososphaera gargensis RepID=K0IJ55_NITGG
ribosomal protein L31E
50S ribosomal protein L31e {ECO:0000256|HAMAP-Rule:MF_00410}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_1288_28
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

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comp(20935..21894)
DNA (960bp) protein (320aa)
Tubulin/FtsZ GTPase Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BFV7_9ARCH
tubulin/FtsZ family, GTPase domain protein
Tubulin/FtsZ family, GTPase domain protein {ECO:0000313|EMBL:AJA91858.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosopelagicus brevis.;"
PLM1_60_b1_redo_sep16_scaffold_1288_29
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(21997..23376)
DNA (1380bp) protein (460aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH81_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58213.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_1288_30
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(23509..24861)
DNA (1353bp) protein (451aa)
hemL1; glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:AIC14320.1}; EC=5.4.3.8 {ECO:0000313|EMBL:AIC14320.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Glutamate-1-semialdehyde 2,1-aminomutase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEP2_NITGG
Displaying 30 items

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