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PLM1_60_b1_redo_sep16_scaffold_42

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_42_1
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(391..1875)
DNA (1485bp) protein (495aa)
hypothetical protein Tax=Brevibacterium sp. JC43 RepID=UPI00037AB902
DNA polymerase {ECO:0000313|EMBL:KFG01328.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
putative RNA-directed DNA polymerase
PLM1_60_b1_redo_sep16_scaffold_42_2
Mycobacterium gastri, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2468..3538)
DNA (1071bp) protein (357aa)
RNA-directed DNA polymerase (Reverse transcriptase) Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B4R6_FRADG
RNA-directed DNA polymerase {ECO:0000313|EMBL:ETW22322.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium gastri 'Wayne'.;"
RNA-directed DNA polymerase
PLM1_60_b1_redo_sep16_scaffold_42_3
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4068..5318)
DNA (1251bp) protein (417aa)
RNA-directed DNA polymerase Tax=Saccharopolyspora spinosa RepID=UPI000237B332
RNA-directed DNA polymerase
RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313|EMBL:ABW12815.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_42_4
Streptomyces sp. Tu 6176, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6383..6952
DNA (570bp) protein (190aa)
hypothetical protein Tax=Streptomyces sp. Amel2xE9 RepID=UPI00037E574B
Uncharacterized protein {ECO:0000313|EMBL:EYT80837.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Tu 6176.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_42_5
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6963..7688
DNA (726bp) protein (242aa)
Methyltransferase type 11 Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9TBH2_MICAI
methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADL46577.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_42_6
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7842..8561)
DNA (720bp) protein (240aa)
Sirohydrochlorin ferrochelatase {ECO:0000313|EMBL:EWC63600.1}; EC=4.99.1.4 {ECO:0000313|EMBL:EWC63600.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
hypothetical protein Tax=Streptomyces sp. CNT302 RepID=UPI000363EF3F
cobalamin (vitamin B12) biosynthesis protein CbiX
PLM1_60_b1_redo_sep16_scaffold_42_7
unknown

Not on your lists

comp(8558..8674)
DNA (117bp) protein (39aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_42_8
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8635..9594)
DNA (960bp) protein (320aa)
Bifunctional uroporphyrinogen-III synthetase/response regulator domain protein {ECO:0000313|EMBL:KDN19381.1}; EC=4.2.1.75 {ECO:0000313|EMBL:KDN19381.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
Uroporphyrinogen III synthase HEM4 Tax=Frankia sp. CN3 RepID=G6HIV2_9ACTO
uroporphyrinogen-III synthase
PLM1_60_b1_redo_sep16_scaffold_42_9
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9591..9953)
DNA (363bp) protein (121aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000360D549
Ferredoxin {ECO:0000313|EMBL:EWS80169.1}; species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
nitrite reductase (NAD(P)H) small subunit
PLM1_60_b1_redo_sep16_scaffold_42_10
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9950..12457)
DNA (2508bp) protein (836aa)
Nitrite reductase [NAD(P)H] large subunit (EC:1.7.1.4)
NAD(P)H-dependent nitrite reductase, large subunit Tax=Frankia sp. QA3 RepID=I9KI96_9ACTO
NAD(P)H-dependent nitrite reductase, large subunit {ECO:0000313|EMBL:EXG80164.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
PLM1_60_b1_redo_sep16_scaffold_42_11
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12454..13902)
DNA (1449bp) protein (483aa)
Assimilatory nitrate reductase (NADH) beta subunit {ECO:0000313|EMBL:KDA43408.1}; EC=1.7.1.1 {ECO:0000313|EMBL:KDA43408.1};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=Micromonospora sp. (strain L5) RepID=E8SAK8_MICSL
fad-dependent pyridine nucleotide-disulfide oxidoreductase
PLM1_60_b1_redo_sep16_scaffold_42_12
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13899..16100)
DNA (2202bp) protein (734aa)
assimilatory nitrate reductase (NADH) subunit alpha (EC:1.7.1.1)
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein {ECO:0000313|EMBL:ABD10247.1}; EC=1.7.1.1 {ECO:0000313|EMBL:ABD10247.1};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein Tax=Frankia sp. (strain CcI3) RepID=Q2JEP5_FRASC
PLM1_60_b1_redo_sep16_scaffold_42_13
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16225..17664)
DNA (1440bp) protein (480aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI0003681C43
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADD42401.1}; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
PLM1_60_b1_redo_sep16_scaffold_42_14
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18006..18698
DNA (693bp) protein (231aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2PIE9_9ACTO
ABC-type cobalt transport system
ABC-type cobalt transport system {ECO:0000313|EMBL:CCK29498.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
PLM1_60_b1_redo_sep16_scaffold_42_15
unknown

Not on your lists

18695..18964
DNA (270bp) protein (90aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_42_16
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18961..19728
DNA (768bp) protein (256aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00036C4878
Cobalt ABC transporter permease {ECO:0000313|EMBL:KDS86425.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
putative cobalt transporter
PLM1_60_b1_redo_sep16_scaffold_42_17
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19732..20286)
DNA (555bp) protein (185aa)
Lipoprotein (Fragment) Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1UQA9_9MICC
Lipoprotein {ECO:0000313|EMBL:EMY32576.1}; Flags: Fragment;; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_42_18
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20603..22429
DNA (1827bp) protein (609aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI000378CAC0
VWA domain protein {ECO:0000313|EMBL:EXG80122.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_42_19
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22479..23711)
DNA (1233bp) protein (411aa)
Chorismate binding protein Tax=Micromonospora sp. ATCC 39149 RepID=C4RCF7_9ACTO
Chorismate binding protein {ECO:0000313|EMBL:EEP69810.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
anthranilate synthase component I/chorismate-binding protein
PLM1_60_b1_redo_sep16_scaffold_42_20
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23757..23954
DNA (198bp) protein (66aa)
Uncharacterized protein Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2KA67_STRHJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY94210.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
PLM1_60_b1_redo_sep16_scaffold_42_21
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24137..27004)
DNA (2868bp) protein (956aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
glycine dehydrogenase Tax=Longispora albida RepID=UPI00037FC774
glycine dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_42_22
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27315..28001)
DNA (687bp) protein (229aa)
Hypothetical membrane protein Tax=Rhodococcus opacus (strain B4) RepID=C1B1X6_RHOOB
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAH50400.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
PLM1_60_b1_redo_sep16_scaffold_42_23
Gordonia amarae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28132..28731)
DNA (600bp) protein (200aa)
Putative MerR family transcriptional regulator Tax=Gordonia amarae NBRC 15530 RepID=G7GJA8_9ACTO
Putative MerR family transcriptional regulator {ECO:0000313|EMBL:GAB03683.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_42_24
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28894..29346)
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F1N1_VERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB45260.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_42_25
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29568..30305)
DNA (738bp) protein (246aa)
Transcriptional regulator, MerR family Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LU87_ACIC1
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABK52997.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM1_60_b1_redo_sep16_scaffold_42_26
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30302..30772)
DNA (471bp) protein (157aa)
signal peptide protein Tax=Longispora albida RepID=UPI00037CB31C
Signal peptide protein {ECO:0000313|EMBL:KHD73237.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
FHA domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_42_27
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31044..31427)
DNA (384bp) protein (128aa)
Glycine cleavage system H protein Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K868_SACES
Glycine cleavage system H protein
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272, ECO:0000313|EMBL:CCH33722.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM1_60_b1_redo_sep16_scaffold_42_28
Xylanimonas cellulosilytica, Xylanimonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31484..32686)
DNA (1203bp) protein (401aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00037B37D1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ30760.1}; species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Xylanimonas.;" source="Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990; / XIL07).;"
PLM1_60_b1_redo_sep16_scaffold_42_29
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32683..33015)
DNA (333bp) protein (111aa)
membrane protein Tax=Actinoplanes globisporus RepID=UPI00035D177B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL17538.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM1_60_b1_redo_sep16_scaffold_42_30
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33012..34046)
DNA (1035bp) protein (345aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI000378A0FE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV98367.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
Displaying items 1-30 of 82 in total

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