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PLM1_60_b1_redo_sep16_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_55_1
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

200..1129
DNA (930bp) protein (310aa)
hypothetical protein Tax=Longispora albida RepID=UPI00036E9028
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB43926.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_55_2
unknown

Not on your lists

comp(1272..1907)
DNA (636bp) protein (212aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_55_3
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1926..4376)
DNA (2451bp) protein (817aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587, ECO:0000313|EMBL:CCG04712.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
glgP; glycogen phosphorylase (EC:2.4.1.1)
Phosphorylase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RXA1_BLASD
PLM1_60_b1_redo_sep16_scaffold_55_4
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4598..6577
DNA (1980bp) protein (660aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FHB5_VERMA
alpha amylase catalytic sub domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_55_5
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6574..8421
DNA (1848bp) protein (616aa)
trehalose synthase Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628159
malZ; maltose alpha-D-glucosyltransferase
Maltose alpha-D-glucosyltransferase {ECO:0000313|EMBL:AIJ22850.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM1_60_b1_redo_sep16_scaffold_55_6
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8418..9812
DNA (1395bp) protein (465aa)
aminoglycoside phosphotransferase Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI000262815A
Pep2 protein {ECO:0000313|EMBL:EWM16202.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_55_7
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9931..12354
DNA (2424bp) protein (808aa)
1,4-alpha-glucan branching enzyme GlgB Tax=Frankia sp. CN3 RepID=G6HEF1_9ACTO
1,4-alpha-glucan branching enzyme {ECO:0000313|EMBL:AEK41131.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
glgB; 1,4-alpha-glucan branching enzyme
PLM1_60_b1_redo_sep16_scaffold_55_8
unknown

Not on your lists

12507..13355
DNA (849bp) protein (283aa)
Uncharacterized protein Tax=Bacillus cereus VD166 RepID=J8KWD0_BACCE
PLM1_60_b1_redo_sep16_scaffold_55_9
unknown

Not on your lists

13468..13713
DNA (246bp) protein (82aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_55_10
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13734..18674)
DNA (4941bp) protein (1647aa)
NAD-glutamate dehydrogenase Tax=Micromonospora sp. CNB394 RepID=UPI000368A482
Nad-glutamate dehydrogenase {ECO:0000313|EMBL:AEB46948.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
nad-glutamate dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_55_11
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18916..19848)
DNA (933bp) protein (311aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003751FDD
thioredoxin domain-containing protein
Thioredoxin domain {ECO:0000313|EMBL:ABP56038.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
PLM1_60_b1_redo_sep16_scaffold_55_12
unknown

Not on your lists

comp(19896..20066)
DNA (171bp) protein (57aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_55_13
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20308..21975)
DNA (1668bp) protein (556aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:ACZ84694.1}; EC=5.4.99.2 {ECO:0000313|EMBL:ACZ84694.1};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
Methylmalonyl-CoA mutase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AS15_STRRD
PLM1_60_b1_redo_sep16_scaffold_55_14
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22154..22678)
DNA (525bp) protein (175aa)
Transcriptional regulator, MarR-family Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RXB0_BLASD
marR family transcriptional regulator
Transcriptional regulator, MarR-family {ECO:0000313|EMBL:CCG04721.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM1_60_b1_redo_sep16_scaffold_55_15
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22745..23071)
DNA (327bp) protein (109aa)
hypothetical protein Tax=Nocardiopsis gilva RepID=UPI000349CF8D
Export protein {ECO:0000313|EMBL:KJK36978.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
DnaJ domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_55_16
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23129..23899)
DNA (771bp) protein (257aa)
Uncharacterized protein Tax=Mycobacterium phlei RIVM601174 RepID=I0RJT3_MYCPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH99733.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_60_b1_redo_sep16_scaffold_55_17
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24078..24416
DNA (339bp) protein (113aa)
Putative uncharacterized protein (Fragment) Tax=Streptomyces sp. SPB78 RepID=D9UJP9_9ACTO
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) {ECO:0000313|EMBL:EXG79307.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
anti-sigma-factor antagonist
PLM1_60_b1_redo_sep16_scaffold_55_18
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24484..25473)
DNA (990bp) protein (330aa)
putative GTPase (EC:3.6.-.-)
Putative GTPase {ECO:0000313|EMBL:CCH34540.1}; EC=3.6.-.- {ECO:0000313|EMBL:CCH34540.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
Putative GTPase Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K2R8_SACES
PLM1_60_b1_redo_sep16_scaffold_55_19
unknown

Not on your lists

comp(25503..25895)
DNA (393bp) protein (131aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_55_20
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25901..27088)
DNA (1188bp) protein (396aa)
Putative acetyl-CoA acetyltransferase Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K840_SACES
Acetyl-CoA C-acetyltransferase {ECO:0000313|EMBL:EWM16155.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_55_21
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27234..27656
DNA (423bp) protein (141aa)
Methylmalonyl-CoA epimerase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SEP1_GEOOG
methylmalonyl-CoA epimerase
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:ADB76677.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM1_60_b1_redo_sep16_scaffold_55_22
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27745..29088
DNA (1344bp) protein (448aa)
Crotonyl-CoA reductase Tax=Frankia sp. CN3 RepID=G6HEK8_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHI00913.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_60_b1_redo_sep16_scaffold_55_23
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29142..30530
DNA (1389bp) protein (463aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0LAY7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH20984.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_55_24
Streptomyces sp. HPH0547, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30602..34012
DNA (3411bp) protein (1137aa)
Uncharacterized protein Tax=Streptomyces sp. HPH0547 RepID=S3B1R4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD94426.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HPH0547.;"
M protein
PLM1_60_b1_redo_sep16_scaffold_55_25
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34074..35339
DNA (1266bp) protein (422aa)
hypothetical protein Tax=Longispora albida RepID=UPI000365733B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL48612.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_55_26
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35433..36224)
DNA (792bp) protein (264aa)
Hydrolase, alpha/beta fold family Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AS05_STRRD
hydrolase
Hydrolase, alpha/beta fold family {ECO:0000313|EMBL:ACZ84684.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_60_b1_redo_sep16_scaffold_55_27
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36356..37159)
DNA (804bp) protein (268aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI0003673FC9
Putative oxidoreductase {ECO:0000313|EMBL:ELS50764.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes Tue57.;"
gluconate dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_55_28
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37156..37968)
DNA (813bp) protein (271aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F7Y8_VERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB46963.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_55_29
unknown

Not on your lists

comp(38375..39385)
DNA (1011bp) protein (337aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_55_30
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39382..39891)
DNA (510bp) protein (170aa)
Putative RNA polymerase ECF-subfamily sigma factor Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W972_9ACTO
putative RNA polymerase ECF-subfamily sigma factor
Putative RNA polymerase ECF-subfamily sigma factor {ECO:0000313|EMBL:AGZ44491.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
Displaying items 1-30 of 60 in total

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